Ruprecht-Karls-Universität Heidelberg

Publications


Category Year Author

    2015

  • Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
    J. Calì, D. J. Boges, G. R. Holst, A. Kreshuk, F. A. Hamprecht, M. Srinivasan, H. Lehväslaiho, P. J. Magistretti
    Journal of Comparative Neurology, (2015)
    [10.1002/cne.23852 | BibTeX]
  • Multi-Target Tracking with Probabilistic Graphical Models
    Schiegg , University of Heidelberg
    PhD Thesis [BibTeX]
  • Cell event detection in phase-contrast microscopy sequences from few annotations
    M. Kandemir, F. A. Hamprecht
    in: MICCAI. Proceedings, (2015) [BibTeX]
  • Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain
    A. Kreshuk, J. Funke, A. Cardona, F. A. Hamprecht
    in: MICCAI. Proceedings, (2015) [BibTeX]
  • Asymmetric transfer learning with deep Gaussian processes
    M. Kandemir
    in: ICML. Proceedings, (2015)
    [Technical Report | BibTeX]
  • Learning to Segment: Training Hierarchical Segmentation under a Topological Loss
    J. Funke, F. A. Hamprecht, C. Zhang
    ##: MICCAI. Proceedings, Part III (2015)
    [10.1007/978-3-319-24574-4 | BibTeX]
  • Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves
    A. Kreshuk, R. Walecki, U. Köthe, M. Gierthmühlen, D. Plachta, C. Genoud, K. Haastert-Talini, F. A. Hamprecht
    Journal of Microscopy, (2015) 000, 1-12
    [10.1111/jmi.12266 | BibTeX]
  • A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems
    J. H. Kappes, B. Andres, F. A. Hamprecht, C. Schnörr, S. Nowozin, D. Batra, S. Kim, B. X. Kausler, T. Kröger, J. Lellmann, N. Komodakis, B. Savchynskyy, C. Rother
    International Journal of Computer Vision, (2015), 1-30
    [10.1007/s11263-015-0809-x | Technical Report | BibTeX]
  • Fusion Moves for Correlation Clustering
    T. Beier, F. A. Hamprecht, J. H. Kappes
    in: CVPR. Proceedings, (2015), 3507-3516
    [Technical Report | BibTeX]
  • Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors
    N. Krasowski, T. Beier, G. W. Knott, U. Köthe, F. A. Hamprecht, A. Kreshuk
    in: ISBI. Proceedings, (2015), 536-539
    [10.1109/ISBI.2015.7163929 | Technical Report | BibTeX]
  • Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models
    M. Schiegg, B. Heuer, C. Haubold, S. Wolf, U. Köthe, F. A. Hamprecht
    in: ISBI. Proceedings, (2015), 394-398
    [10.1109/ISBI.2015.7163895 | Technical Report | BibTeX]
  • Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals
    J .P. Kauppi, M. Kandemir, V .M. Saarinen, L. Hirvenkari, L. Parkkonen, A. Klami, R. Hari, S. Kaski
    NeuroImage, (2015)
    [10.1016/j.neuroimage.2014.12.079 | Technical Report | BibTeX]
  • Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell
    M. Schiegg, P. Hanslovsky, C. Haubold, U. Köthe, L. Hufnagel, F. A. Hamprecht
    Bioinformatics, (2015) 31, 948-956
    [10.1093/bioinformatics/btu764 | Technical Report | URL | BibTeX]
  • 2014

  • Neural Networks: Optimization and Applications
    G. Urban , University of Heidelberg
    Master Thesis [BibTeX]
  • Sparse Space-Time Deconvolution for Calcium Image Analysis
    F. Diego, F. A. Hamprecht
    in: NIPS. Proceedings, (2014), 64-72
    [Technical Report | URL | BibTeX]
  • Hierarchical Planar Correlation Clustering for Cell Segmentation
    J. Yarkony, C. Zhang, C. C. Fowlkes
    in: EMMCVPR. Proceedings, Springer(2014) 8932, 492-504
    [10.1007/978-3-319-14612-6_36 | Technical Report | BibTeX]
  • Semi-Global Matching: A Principled Derivation in Terms of Message Passing
    A. Drory, C. Haubold, S. Avidan, F. A. Hamprecht
    in: GCPR. Proceedings, (2014), 43-53
    [10.1007/978-3-319-11752-2_4 | Technical Report | BibTeX]
  • Casting Random Forests as Artificial Neural Networks (and Profiting from It)
    J. Welbl
    in: GCPR. Proceedings, (2014), 765-771
    [10.1007/978-3-319-11752-2_66 | Technical Report | BibTeX]
  • ilastik for Multi-modal Brain Tumor Segmentation
    J. Kleesiek, A. Biller, G. Urban, U. Köthe, M. Bendszus, F. A. Hamprecht
    in: MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rd place, (2014)
    [Technical Report | BibTeX]
  • Multi-modal Brain Tumor Segmentation using Deep Convolutional Neural Networks
    G. Urban, M. Bendszus, F. A. Hamprecht, J. Kleesiek
    in: MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winning contribution, (2014), 31-35
    [BibTeX]
  • Detecting individual body parts improves mouse behavior classification
    C. Decker, F. A. Hamprecht
    in: Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). Proceedings, (2014)
    [Technical Report | BibTeX]
  • Learning-based Segmentation for Connectomics
    T. Kröger , University of Heidelberg
    PhD Thesis [BibTeX]
  • Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability
    X. Lou, M. Schiegg, F. A. Hamprecht
    IEEE Transactions on Medical Imaging, (2014) 33 (4), 849-860
    [10.1109/TMI.2013.2296937 | BibTeX]
  • Asymmetric Cuts: Joint Image Labeling and Partitioning
    T. Kröger, J. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: GCPR. Proceedings, (2014) 8753
    [10.1007/978-3-319-11752-2_16 | Technical Report | BibTeX]
  • Interactive Segmentation, Uncertainty and Learning
    C. Straehle , University of Heidelberg
    PhD Thesis [BibTeX]
  • Multiple Instance Learning with Random Forests and Applications in Industrial Optical Inspection
    M. Wieler , University of Heidelberg
    PhD Thesis [BibTeX]
  • Structured Learning from Cheap Data
    X. Lou, M. Kloft, G. Rätsch, F. A. Hamprecht
    in: Advanced Structured Prediction, The MIT Press(2014)
    [Technical Report | BibTeX]
  • Cell detection and segmentation using correlation clustering
    C. Zhang, J. Yarkony, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014), 9-16
    [10.1007/978-3-319-10404-1_2 | Technical Report | BibTeX]
  • Instance Label Prediction by Dirichlet Process Multiple Instance Learning
    M. Kandemir, F. A. Hamprecht
    in: UAI. Proceedings, in press, (2014)
    [Technical Report | BibTeX]
  • Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures
    M. Kandemir, J. C. Rubio, U. Schmidt, J. Welbl, B. Ommer, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014), 154-161
    [10.1007/978-3-319-10470-6_20 | Technical Report | BibTeX]
  • Computer-aided diagnosis from weak supervision: A benchmarking study
    M. Kandemir, F. A. Hamprecht
    Computerized Medical Imaging and Graphics, (2014) 42, 44-50
    [10.1016/j.compmedimag.2014.11.010 | Technical Report | BibTeX]
  • SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy
    U. Köthe, F. Herrmannsdörfer, I. Kats, F. A. Hamprecht
    Histochemistry and Cell Biology, (2014) 141, 613-627
    [10.1007/s00418-014-1211-4 | Technical Report | BibTeX]
  • Information-Geometric Optimization for Image Segmentation
    F. Blumenthal , University of Heidelberg
    Master Thesis [BibTeX]
  • Graph based image analysis
    T. Beier , University of Heidelberg
    Master Thesis [BibTeX]
  • Empowering multiple instance histopathology cancer diagnosis by cell graphs
    M. Kandemir, C. Zhang, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014) 8674, 228-235
    [10.1007/978-3-319-10470-6_29 | Technical Report | BibTeX]
  • Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites
    B. Maco, M. Cantoni, A. Holtmaat, A. Kreshuk, F. A. Hamprecht, G. Knott
    Nature Protocols, (2014) 9, 1354-1366
    [10.1038/nprot.2014.101 | BibTeX]
  • Multiple instance learning with response-optimized random forests
    C. Straehle, M. Kandemir, U. Köthe, F. A. Hamprecht
    in: ICPR. Proceedings, (2014), 3768 - 3773
    [10.1109/ICPR.2014.647 | Technical Report | BibTeX]
  • Tracking indistinguishable translucent objects over time using weakly supervised structured learning
    L. Fiaschi, F. Diego, K. Gregor, M. Schiegg, U. Köthe, M. Zlatic, F. A. Hamprecht
    in: CVPR. Proceedings, (2014), 2736 - 2743
    [10.1109/CVPR.2014.356 | Technical Report | BibTeX]
  • Cut, Glue & Cut: A Fast, Approximate Solver for Multicut Partitioning
    T. Beier, T. Kröger, J. H. Kappes, U. Köthe, F. A. Hamprecht
    in: CVPR. Proceedings, (2014), 73-80
    [10.1109/CVPR.2014.17 | Technical Report | BibTeX]
  • Multi-task and multi-view learning of user state
    M. Kandemir, A. Klami, M. Gonen, A. Vetek, S. Kaski
    Neurocomputing, (2014) 139, 97-106
    [10.1016/j.neucom.2014.02.057 | Technical Report | BibTeX]
  • Automated Animal Behavior Classification
    C. Decker , University of Heidelberg
    Master Thesis [BibTeX]
  • Digital Pathology: Multiple instance learning can detect Barrett's cancer
    M. Kandemir, A. Feuchtinger, A. Walch, F. A. Hamprecht
    in: ISBI. Proceedings, (2014), 1348 - 1351
    [10.1109/ISBI.2014.6868127 | Technical Report | BibTeX]
  • Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation
    R. Lindner, X. Lou, J. Reinstein, R. L. Shoeman, Hamprecht F. A., A. Winkler
    Journal of The American Society for Mass Spectrometry, (2014) 25, 1018-1028
    [10.1007/s13361-014-0850-y | Technical Report | BibTeX]
  • Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks
    A. Kreshuk, U. Köthe, E. Pax, D. D. Bock, F. A. Hamprecht
    PLoS ONE, (2014) 9, 2
    [10.1371/journal.pone.0087351 | Technical Report | BibTeX]
  • Yeast Cell Detection and Segmentation in Bright Field Microscopy
    C. Zhang, F. Huber, M. Knop, F. A. Hamprecht
    in: ISBI. Proceedings, IEEE Computer Society(2014), 1267-1270
    [10.1109/ISBI.2014.6868107 | Technical Report | BibTeX]
  • Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue
    B. F. Tek, T. Kröger, S. Mikula, F. A. Hamprecht
    in: ISBI. Proceedings, (2014), 69-72
    [10.1109/ISBI.2014.6867811 | Technical Report | BibTeX]
  • 2013

  • Weakly supervised learning: Active schemes and partial annotations
    B. Xu , University of Heidelberg
    Master Thesis [BibTeX]
  • Advanced Cell Tacking-by-Assignment
    P. Hanslovsky , University of Heidelberg
    Master Thesis [BibTeX]
  • Large-Scale Automatic Reconstruction of Myelianated Axons and Detection of the Nodes of Ranvier
    R. Walecki , University of Heidelberg
    Master Thesis [BibTeX]
  • Learning Based Biological Image Analysis
    L. Fiaschi , University of Heidelberg
    PhD Thesis [BibTeX]
  • Weakly supervised learning of image partitioning using decision trees with structured split criteria
    C. Straehle, U. Köthe, F. A. Hamprecht
    in: ICCV 2013. Proceedings, (2013), 1849-1856
    [10.1109/ICCV.2013.232 | Technical Report | BibTeX]
  • Learning Multi-Level Sparse Representation
    F. Diego, F. A. Hamprecht
    in: NIPS. Proceedings, (2013)
    [Technical Report | URL | BibTeX]
  • Conservation Tracking
    M. Schiegg, P. Hanslovsky, B. X. Kausler, L. Hufnagel, F. A. Hamprecht
    in: ICCV 2013. Proceedings, (2013), 2928--2935
    [10.1109/ICCV.2013.364 | Technical Report | BibTeX]
  • SimpleSTORM an Efficient Selfcalibrating Reconstruction Algorithm for Single and Multi-Channel Localisation Microscopy
    F. Herrmannsdörfer , University of Heidelberg
    Master Thesis [BibTeX]
  • Tracking-by-Assignment as a Probabilistic Graphical Model with Applications in Developmental Biology
    B. Kausler , University of Heidelberg
    PhD Thesis [BibTeX]
  • Active Learning: New Approaches, and Industrial Applications
    J. Röder , University of Heidelberg
    PhD Thesis [BibTeX]
  • Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
    B. Maco, A. Holtmaat, M. Cantoni, A. Kreshuk, C. N. Straehle, F. A. Hamprecht, G. W. Knott
    PloS one, (2013) 8 (2)
    [10.1371/journal.pone.0057405 | BibTeX]
  • Automated Processing of Zebrafish Imaging Data: A Survey
    R. Mikut, T. Dickmeis, W. Driever, P. Geurts, F. A. Hamprecht, B. X. Kausler, M. Ledesma-Carbayo, R. Marée, K. Mikula, P. Pantazis, O. Ronneberger, A. Santos, R. Stotzka, U. Strähle, N. Peyriéras
    Zebrafish, (2013) 10 (3)
    [10.1089/zeb.2013.0886 | BibTeX]
  • Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields
    S. Wanner, C. Straehle, B. Goldlücke
    CVPR 2013. Proceedings, (2013), 1011-1018
    [10.1109/CVPR.2013.135 | BibTeX]
  • K-smallest Spanning Tree Segmentations
    C. Straehle, S. Peter, U. Köthe, F. A. Hamprecht
    in: German Conference on Pattern Recognition (DAGM/GCPR). Proceedings, Springer(2013), 375-384
    [10.1007/978-3-642-40602-7_40 | Technical Report | BibTeX]
  • Learning to Segment Neurons with Non-local Quality Measures
    T. Kröger, S. Mikula, W. Denk, U. Köthe, F. A. Hamprecht
    in: MICCAI 2013. Proceedings, part II, Springer(2013) 8150, 419-427
    [10.1007/978-3-642-40763-5_52 | Technical Report | BibTeX]
  • Learning Multi-Level Sparse Representation for Identifying Neuronal Activity
    F. Diego, F. A. Hamprecht
    in: Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of Abstracts., (2013)
    [Technical Report | BibTeX]
  • A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems
    J. H. Kappes, B. Andres, F. A. Hamprecht, C. Schnörr, S. Nowozin, D. Batra, K. Sungwoong, B. X. Kausler, J. Lellmann, N. Komodakis, C. Rother
    in: CVPR. Proceedings, (2013)
    [10.1109/CVPR.2013.175 | Technical Report | BibTeX]
  • Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning
    F. Diego, S. Reichinnek, M. Both, F. A. Hamprecht
    ISBI 2013. Proceedings, (2013), 1058-1061
    [10.1109/ISBI.2013.6556660 | Technical Report | BibTeX]
  • Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects
    L. Fiaschi, K. Gregor, B. Afonso, M. Zlatic, F. A. Hamprecht
    ISBI 2013.Proceedings, (2013), 656-659
    [10.1109/ISBI.2013.6556560 | Technical Report | BibTeX]
  • 2012

  • Road Geometry Classification by Adaptive Shape Models
    J. M. Álvarez, T. Gevers, F. Diego, A. M. López
    IEEE Transactions on Intelligent Transportation Systems (ITS), (2012) 99, 1-10
    [10.1109/TITS.2012.2221088 | BibTeX]
  • Joint Spatio–Temporal Alignment of Sequences
    F. Diego, J. Serrat, A. M. López
    IEEE Transactions on Multimedia (TMM), (2012) PP (99), 1
    [10.1109/TMM.2013.2247390 | Technical Report | BibTeX]
  • You Are Who Knows You: Predicting Links Between Non-Members of Facebook
    E.-Á. Horvát, M. Hanselmann, F. A. Hamprecht, K. A. Zweig
    European Conference on Complex Systems. Proceedings, (2012) 3, 309-315
    [10.1007/978-3-319-00395-5_41 | Technical Report | BibTeX]
  • Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images
    M. Hanselmann, J. Röder, U. Köthe, B. Y. Renard, R. M. A. Heeren, F. A. Hamprecht
    Analytical Chemistry, (2012) 85 (1), 147-155
    [10.1021/ac3023313 | Technical Report | BibTeX]
  • Automated Analysis of Biomedical Data from Low to High Resolution
    Anna Kreshuk , University of Heidelberg
    PhD Thesis [BibTeX]
  • Quality Classification of Microscopic Imagery with Weakly Supervised Learning
    X. Lou, L. Fiaschi, U. Köthe, F. A. Hamprecht
    MICCAI-MLMI. Proceedings, (2012), 176-183
    [10.1007/978-3-642-35428-1_22 | Technical Report | BibTeX]
  • Learning to Count with Regression Forest and Structured Labels
    L. Fiaschi, R. Nair, U. Köthe, F. A. Hamprecht
    ICPR 2012. Proceedings, (2012), 2685-2688
    [Technical Report | BibTeX]
  • Active Learning with Distributional Estimates
    J. Röder, K. Kunzmann, B. Nadler, F. A. Hamprecht
    UAI 2012. Proceedings, (2012), 715-725
    [Technical Report | BibTeX]
  • Learning-based Mitotic Cell Detection in Histopathological Images
    C. Sommer, L. Fiaschi, F. A. Hamprecht, D. Gerlich
    ICPR 2012. Proceedings, (2012), 2306-2309
    [Technical Report | BibTeX]
  • The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models
    B. Andres, B. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 7, (2012) 7578, 154-166
    [10.1007/978-3-642-33786-4_12 | Technical Report | BibTeX]
  • A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness
    B. X. Kausler, M. Schiegg, B. Andres, M. Lindner, U. Köthe, H. Leitte, J. Wittbrodt, L. Hufnagel, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 3, (2012) 7574, 144-157
    [10.1007/978-3-642-33712-3_11 | Technical Report | BibTeX]
  • Globally Optimal Closed-Surface Segmentation for Connectomics
    B. Andres, T. Kröger, K. L. Briggmann, W. Denk, N. Norogod, G. Knott, U. Köthe, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 3, (2012), 778-791
    [10.1007/978-3-642-33712-3_56 | Technical Report | BibTeX]
  • Structured Learning from Partial Annotations
    X. Lou, F. A. Hamprecht
    ICML 2012. Proceedings, (2012)
    [Technical Report | URL | BibTeX]
  • Overcoming species boundaries in peptide identification with BICEPS
    B. Renard, B. Xu, M. Kirchner, F. Zickmann, D. Winter, S. Korten, N. Brattig, A. Tzur, F. A. Hamprecht, H. Steen
    Molecular and Cellular Proteomics, (2012) 11
    [10.1074/mcp.M111.014167 | BibTeX]
  • Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data
    J. Funke, B. Andres, F. A. Hamprecht, A. Cardona, M. Cook
    CVPR 2012. Proceedings, (2012), 1004-1011
    [10.1109/CVPR.2012.6247777 | Technical Report | BibTeX]
  • One plus one makes three (for social networks)
    E.-Á. Horvát, M. Hanselmann, F.A. Hamprecht, K.A. Zweig
    PLoS ONE, (2012) 4,7
    [10.1371/journal.pone.0034740 | BibTeX]
  • Seeded watershed cut uncertainty estimators for guided interactive segmentation
    C. Straehle, U. Köthe, K. Briggman, W. Denk, F.A. Hamprecht
    in: CVPR 2012. Proceedings, (2012), 765 - 772
    [10.1109/CVPR.2012.6247747 | Technical Report | BibTeX]
  • Learning to Segment Dense Cell Nuclei with Shape Prior
    X. Lou, F. A. Hamprecht
    CVPR 2012. Proceedings, (2012), 1012-1018
    [10.1109/CVPR.2012.6247778 | Technical Report | BibTeX]
  • Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer
    C.M. Zechmann, B.H. Menze, B.M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Delorme, F.A. Hamprecht, P. Bachert
    Academic Radiology, (2012) 19, 6, 675-684
    [10.1016/j.acra.2012.02.014 | BibTeX]
  • 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries
    B. Andres, U. Köthe, T. Kröger, M. Helmstaedter, K.L. Briggman, W. Denk, F. A. Hamprecht
    Medical Image Analysis, (2012) 16 (2012), 796-805
    [10.1016/j.media.2011.11.004 | Technical Report | BibTeX]
  • 2011

  • Image Processing for Super-Resolution Localization Microscopy Utilizing an FPGA Accelerator
    J. Schleicher , University of Heidelberg
    Master Thesis [BibTeX]
  • Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model
    B. Andres , University of Heidelberg
    PhD Thesis
    [Technical Report | BibTeX]
  • Image-Based Supervision of a Periodically Working Machine
    M. Frank, F. A. Hamprecht
    Pattern Analysis and Applications, (2011), 1-10
    [10.1007/s10044-011-0245-7 | Technical Report | BibTeX]
  • Structured Learning for Cell Tracking
    X. Lou, F. A. Hamprecht
    in: NIPS 2011. Proceedings, (2011), 1296-1304
    [Download | Technical Report | BibTeX]
  • Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images
    A. Kreshuk, C. N. Straehle, C. Sommer, U. Köthe, M. Cantoni, G. Knott, F. A. Hamprecht
    PLoS ONE, (2011) 6 (10)
    [10.1371/journal.pone.0024899 | BibTeX]
  • Globally Optimal Image Partitioning by Multicuts
    J. H. Kappes, M. Speth, B. Andres, G. Reinelt, C. Schnörr
    in: EMMCVPR, Springer(2011), 31-44
    [10.1007/978-3-642-23094-3_3 | Technical Report | BibTeX]
  • A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface
    S. Wanner, C. Sommer, R. Rocholz, F. A. Hamprecht, B. Jähne
    in: 16th International Workshop on Vision, Modelling and Visualization, Eurographics Association, Germany(2011), 199-206
    [10.2312/PE/VMV/VMV11/199-206 | Technical Report | BibTeX]
  • Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy
    M. Pfannmöller, H. Flügge, G. Benner, I. Wacker, C. Sommer, M. Hanselmann, S. Schmale, H. Schmidt, F. A. Hamprecht, T. Rabe, W. Kowalsky, R. Schröder
    Nano Letters, (2011) 11, 3099-3107
    [10.1021/nl201078t | BibTeX]
  • Biomedical Data Analysis with Prior Knowledge: Modeling and Learning
    X. Lou , University of Heidelberg
    PhD Thesis [BibTeX]
  • Probabilistic Image Segmentation with Closedness Constraints
    B. Andres, J. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: ICCV, Proceedings, (2011), 2611 - 2618
    [10.1109/ICCV.2011.6126550 | Technical Report | BibTeX]
  • Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images
    C. N. Straehle, U. Köthe, G. Knott, F. A. Hamprecht
    in: MICCAI 2011, Proceedings., Springer(2011) 6891, 653-660
    [10.1007/978-3-642-23623-5_82 | Technical Report | BibTeX]
  • Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics
    F. Kaster , University of Heidelberg
    PhD Thesis [BibTeX]
  • On oblique random forests
    B. Menze, B. H. Kelm, N. Splitthoff, U. Köthe, F. A. Hamprecht
    in: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., Springer(2011), 453-469
    [10.1007/978-3-642-23783-6_29 | Technical Report | BibTeX]
  • Gaussian process classification: singly versus doubly stochastic models, and new computational schemes
    J. Röder, R. Tolosana-Delgado, F. A. Hamprecht
    Stochastic Environmental Research & Risk Assessment, (2011) 25 (7), 865-879
    [10.1007/s00477-011-0498-0 | Technical Report | BibTeX]
  • A Machine Learning Approach to Improve Digital Embryo Analysis
    M. Lindner , University of Heidelberg
    Master Thesis
    [Technical Report | BibTeX]
  • Interactive Segmentation of Neural Electron Microscopy Data
    C. Straehle , University of Heidelberg
    Master Thesis [BibTeX]
  • SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists
    M. Hanselmann, B. Voss, B. Y. Renard, M. Lindner, U. Köthe, M. Kirchner, F. A. Hamprecht
    Bioinformatics, (2011) 27 (7), 987-993
    [10.1093/bioinformatics/btr051 | Technical Report | BibTeX]
  • Automated Segmentation of Synapses in 3D EM Data
    A. Kreshuk, C. Strähle, C. Sommer, U. Köthe, G. Knott, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 220-223
    [10.1109/ISBI.2011.5872392 | Technical Report | BibTeX]
  • DELTR: Digital Embryo Lineage Tree Reconstructor
    X. Lou, F. Kaster, M. Lindner, B. Kausler, U. Köthe, B. Höckendorf, J. Wittbrodt, H. Jänicke, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 1557-1560
    [10.1109/ISBI.2011.5872698 | Technical Report | BibTeX]
  • ilastik: Interactive Learning and Segmentation Toolkit
    C. Sommer, C. Strähle, U. Köthe, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 230-233
    [10.1109/ISBI.2011.5872394 | Technical Report | BibTeX]
  • An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
    F. O. Kaster, B. Merkel, O. Nix, F. A. Hamprecht
    Computer Science - Research and Development, (2011) 26, 65-85
    [10.1007/s00450-010-0143-z | Technical Report | BibTeX]
  • Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations
    F. Kaster, B. H. Menze, M.-A. Weber, F. A. Hamprecht
    in: MICCAI 2010 Workshop MCV, Springer, Heidelberg(2011) LNCS 6533, 74-85
    [10.1007/978-3-642-18421-5_8 | Technical Report | BibTeX]
  • Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images
    B. M. Kelm, F. Kaster, A. Henning, M.-A. Weber, P. Bachert, P. Bösinger, F. A. Hamprecht, B. H. Menze
    NMR in Biomedicine, (2011) 25(1), 1-13
    [10.1002/nbm.1704 | Technical Report | BibTeX]
  • 2010

  • Robust Methods for the Proteomic Data Analysis Pipeline
    B. Renard , University of Heidelberg
    PhD Thesis [BibTeX]
  • Exploratory and computational analysis of huge volume images for connectomics
    T. Kröger , University of Heidelberg
    Master Thesis
    [Technical Report | BibTeX]
  • Multimodal Medical Image Analysis: from Visualization to Disease Modeling
    B. H. Menze, F. A. Hamprecht
    Zeitschrift für Med. Physik, (2010) 1, 1-2
    [10.1016/j.zemedi.2010.12.002 | BibTeX]
  • Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x
    B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [Technical Report | URL | BibTeX]
  • How to Extract the Geometry and Topology from Very Large 3D Segmentations
    B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [Technical Report | URL | BibTeX]
  • Computational Methods for the Analysis of Mass Spectrometry Images
    M. Hanselmann , University of Heidelberg
    PhD Thesis
    [Technical Report | BibTeX]
  • The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search
    B. Andres, J. H. Kappes, U. Köthe, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [Technical Report | URL | BibTeX]
  • Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon
    A. Kreshuk, M. Stankiewicz, X. Lou, M. Kirchner, F. A. Hamprecht, M. P. Mayer
    International Journal of Mass Spectrometry, (2010) 302, 125-131
    [10.1016/j.ijms.2010.08.025 | Technical Report | BibTeX]
  • Geometric Analysis of 3D Electron Microscopy Data
    U. Köthe, B. Andres, T. Kröger, F. A. Hamprecht
    in: Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), (2010), 22-26
    [Technical Report | BibTeX]
  • An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM
    B. Andres, J. H. Kappes, U. Köthe, C. Schnörr, F. A. Hamprecht
    in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, (2010), 353-362
    [10.1007/978-3-642-15986-2_36 | Technical Report | BibTeX]
  • Interactive Learning for the Analysis of Biomedical and Industrial Imagery
    C. Sommer , University of Heidelberg
    PhD Thesis
    [Technical Report | BibTeX]
  • Learning of Optimal Illumination for Material Classification
    M. Jehle, C. Sommer, B. Jähne
    in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, Springer(2010), 563-572
    [10.1007/978-3-642-15986-2_57 | Technical Report | BibTeX]
  • Automated Quality Control in the Life Sciences
    C. Scheelen , University of Heidelberg
    Master Thesis [BibTeX]
  • Estimating the Confidence of Peptide Identifications without Decoy Databases
    B. Y. Renard, W. Timm, M. Kirchner, J. A. J. Steen, F. A. Hamprecht, H. Steen
    Analytical Chemistry, (2010), 4314-4318
    [10.1021/ac902892j | Technical Report | BibTeX]
  • Active and Online Learning for Interactive Image Analysis
    N. Hüsken , University of Heidelberg
    Master Thesis [BibTeX]
  • Modeling of Spectral Peaks for Mass-Spectrometry-based Proteomics
    B. Kausler , Universities of Karlsruhe and Heidelberg
    Master Thesis
    [Technical Report | BibTeX]
  • MGFp: An Open Mascot Generic Format Parser Library Implementation
    M. Kirchner, J. Steen, F. A. Hamprecht, H. Steen
    Journal of Proteome Research, (2010) 9 (5), 2762–2763
    [10.1021/pr100118f | BibTeX]
  • Using Protein Identification Data to Improve Mass Spectrometry Feature Extraction
    M. Riedl , University of Heidelberg
    Master Thesis [BibTeX]
  • Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments
    X. Lou, M. Kirchner, B. Y. Renard, U. Köthe, C. Graf, C. Lee, J. A. J. Steen, H. Steen, M. P. Mayer, F. A. Hamprecht
    Bioinformatics, (2010) 26(12), 1535-1541
    [10.1093/bioinformatics/btq165 | Technical Report | BibTeX]
  • Construction and analysis of random tree ensembles
    R. Nair , University of Heidelberg
    Master Thesis [BibTeX]
  • An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
    F. O. Kaster, S. Kassemeyer, B. Merkel, O. Nix, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin 2010 - Algorithmen, Systeme, Anwendungen, Springer(2010), 97-101
    [Technical Report | BibTeX]
  • From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication
    K. Börner, J. Hermle, C. Sommer, N. P. Brown, B. Knapp, B. Glass, G. Torralba, J. Reymann, N. Beil, J. Beneke, R. Pepperkok, R. Schneider, T. Ludwig, M. Hausmann, F. A. Hamprecht, H. Erfle, L. Kaderali, H.-G. Kräusslich, M. J. Lehmann
    Biotechnology Journal, (2010) 5, 39-49
    [10.1002/biot.200900226 | Technical Report | BibTeX]
  • Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments
    M. Kirchner, B. Y. Renard, U. Köthe, D. J. Pappin, F. A. Hamprecht, J. A. J. Steen, H. Steen
    Bioinformatics, (2010) 26 (1), 77-83
    [10.1093/bioinformatics/btp607 | Technical Report | BibTeX]
  • 2009

  • Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times
    B. Andres, U. Köthe, A. Bonea, B. Nadler, F. A. Hamprecht
    in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 502-511
    [10.1007/978-3-642-03798-6 | Technical Report | BibTeX]
  • Pixel Approximation Errors in Common Watershed Algorithms
    H. Meine, U. Köthe, P. Stelldinger
    in: Discrete Geometry for Computer Imagery, Springer(2009) 5810, 193-202
    [10.1007/978-3-642-04397-0 | Technical Report | BibTeX]
  • Fast and Accurate 3D Edge Detection for Surface Reconstruction
    C. Bähnisch, P. Stelldinger, U. Köthe
    in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 111-120
    [10.1007/978-3-642-03798-6 | Technical Report | BibTeX]
  • Classification of Spectroscopic Images in the DIROlab Environment
    F.O. Kaster, B.M. Kelm, C.M. Zechmann, M.A. Weber, F.A. Hamprecht, O. Nix
    in: World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, Springer(2009) 25/V, 252--255
    [10.1007/978-3-642-03904-1_70 | BibTeX]
  • A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy
    C. Thieke, O. Nix, A. Koehn, R. Floca, D. van Straaten, H. Hahn, L. G. Strauss, U. Siems, M. Graf, H. Pruem, J. Klein, H. Laue, F. Kaster, F. A. Hamprecht, D. Simon, B. Stieltjes, J. Debus, P. E. Huber
    Strahlentherapie und Onkologie, (2009) 185, 81 [BibTeX]
  • Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition
    N. Ozlu, F. Monigatti, B. Y. Renard, C. M. Field, H. Steen, T. J. Mitchison, J. J. Steen
    Molecular & Cellular Proteomics, (2009)
    [10.1074/mcp.M900308-MCP200 | BibTeX]
  • When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing
    B. Y. Renard, M. Kirchner, F. Monigatti, A. R. Ivanov, J. Rappsilber, D. Winter, J. A. Steen, F. A. Hamprecht, H. Steen
    Proteomics, (2009) 9, 4978-4984
    [10.1002/pmic.200900326 | Technical Report | BibTeX]
  • A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data
    B. H. Menze, B. M. Kelm, R. Masuch, U. Himmelreich, P. Bachert, W. Petrich, F. A. Hamprecht
    BMC Bioinformatics, (2009) 10:213
    [10.1186/1471-2105-10-213 | Technical Report | BibTeX]
  • Multivariate Watershed Segmentation of Compositional Data
    M. Hanselmann, U. Köthe, B. Y. Renard, M. Kirchner, R. M. A. Heeren, F. A. Hamprecht
    in: Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, Springer(2009) 5810, 180-192
    [10.1007/978-3-642-04397-0 | Technical Report | BibTeX]
  • Towards Digital Staining using Imaging Mass Spectrometry and Random Forests
    M. Hanselmann, U. Köthe, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
    Journal of Proteome Research, (2009) 8, 3558-3567
    [10.1021/pr900253y | Technical Report | BibTeX]
  • Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures
    M. Frank, M. Plaue, F. A. Hamprecht
    Optical Engineering, (2009) 48, 077003
    [10.1117/1.3159869 | Technical Report | BibTeX]
  • Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process
    M. Jäger, A. Kiel, D.-P. Herten, F. A. Hamprecht
    ChemPhysChem, (2009) 10:14, 2486-2495
    [10.1002/cphc.200900331 | BibTeX]
  • Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model
    M. Hayn, S. Beirle, F. A. Hamprecht, U. Platt, B. H. Menze, T. Wagner
    Atmospheric Chemistry and Physics, (2009) 9, 9367-9398
    [10.5194/acp-9-6459-2009 | Technical Report | BibTeX]
  • Processing Spectral Data
    L. Görlitz, B. H. Menze, B. M. Kelm, F. A. Hamprecht
    Surface and Interface Analysis, (2009) 41, 636-644
    [10.1002/sia.3066 | Technical Report | BibTeX]
  • Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge
    B. M. Kelm, B. H. Menze, O. Nix, C. Zechmann, F. A. Hamprecht
    IEEE Transaction on Medical Imaging, (2009) 28:10, 1534-1547
    [10.1109/TMI.2009.2019957 | Technical Report | BibTeX]
  • Quantification of Tumour Angiogenesis Using Pattern Recognition
    S. Kassemeyer , University of Heidelberg
    Master Thesis [BibTeX]
  • Semi-automatic analysis of high-information-content neurobiological image data
    J. Greis , University of Heidelberg
    Master Thesis [BibTeX]
  • Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation
    S. Trittler, F. A. Hamprecht
    Digital Signal Processing, (2009) 19, 628-639
    [10.1016/j.dsp.2008.10.003 | Technical Report | BibTeX]
  • Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras
    M. Frank, M. Plaue, H. Rapp, U. Köthe, B. Jähne, F. A. Hamprecht
    Optical Engineering, (2009) 48, 013602
    [10.1117/1.3070634 | Technical Report | BibTeX]
  • Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen
    M. Staudacher, F. A. Hamprecht, L. Görlitz
    Patent, Patent Number: WO2009/062781 A1 [BibTeX]
  • 2008

  • A Topological Sampling Theorem for Robust Boundary Reconstruction and Image Segmentation
    H. Meine, U. Köthe, P. Stelldinger
    Discrete Applied Mathematics, (2008) 157, 524-541
    [10.1016/j.dam.2008.05.031 | BibTeX]
  • What Can We Learn from Discrete Images about the Continuous World
    U. Köthe
    in: Discrete Geometry for Computer Imagery, Springer(2008) 4992, 4-19
    [10.1007/978-3-540-79126-3_2 | BibTeX]
  • Method for processing an intensity image of a microscope
    M. Staudacher, F. A. Hamprecht, L. Görlitz
    Patent, Patent Number: WO2008/034721-A1; [BibTeX]
  • Alignment and Retention Time Correction of LC-MS Data in Proteomics
    B. Voss , University of Heidelberg
    Master Thesis [BibTeX]
  • Oject Detection with Generic Features: An Application to STED Microscopy
    M. Griessinger , University of Heidelberg
    Master Thesis [BibTeX]
  • Pattern Recognition on Statistically Textured Surfaces
    P. Sauer , University of Heidelberg
    Master Thesis [BibTeX]
  • Concise Representation of MS Images by Probabilistic Latent Semantic Analysis
    M. Hanselmann, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
    Analytical Chemistry, (2008) 80, 9649-9658
    [10.1021/ac801303x | Technical Report | BibTeX]
  • A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras
    H. Rapp, M. Frank, F. A. Hamprecht, B. Jähne
    Int. J. Intelligent Systems Technologies and Applications, (2008) 5, 402-413
    [10.1504/IJISTA.2008.021303 | Technical Report | BibTeX]
  • Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes
    M. Jäger, F. A. Hamprecht
    IEEE Transactions on Industrial Electronics, (2008) 56:4, 1307-1313
    [10.1109/TIE.2008.2008339 | BibTeX]
  • NITPICK: Peak Identification for Mass Spectrometry Data
    B. Y. Renard, M. Kirchner, H. Steen, J. A J. Steen, F. A. Hamprecht
    BMC Bioinformatics, (2008) 9, 355
    [10.1186/1471-2105-9-355 | BibTeX]
  • Peak Identification for Liquid Chromatography and Mass Spectrometry
    S. Boppel , University of Heidelberg
    Master Thesis [BibTeX]
  • Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics
    T. König, B. H. Menze, M. Kirchner, F. Monigatti, K. C. Parker, T. Patterson, J. Jebanthirajah Steen, F. A. Hamprecht, H. Steen
    Journal of Proteome Research, (2008) 7, 3708-3717
    [10.1021/pr700859x | Technical Report | BibTeX]
  • On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation
    B. Andres, C. Kondermann, D. Kondermann, U. Köthe, F. A. Hamprecht, C. S. Garbe
    Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on, (2008), 1-6
    [10.1109/CVPR.2008.4587571 | Technical Report | BibTeX]
  • Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification
    B. Andres, U. Köthe, M. Helmstaedter, W. Denk, F. A. Hamprecht
    in: Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, Springer(2008) 5096, 142-152
    [10.1007/978-3-540-69321-5_15 | Technical Report | BibTeX]
  • Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis
    J. Steen, H. Steen, A. Georgi, K. Parker, M. Springer, M. Kirchner, F. A. Hamprecht, M. W. Kirschner
    Proceedings of the National Academy of Sciences, (2008) 105, 6069-6074
    [10.1073/pnas.0709807104 | Technical Report | BibTeX]
  • Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes
    M. Jäger, S. Humbert, F. A. Hamprecht
    IEEE Transactions on Industrial Electronics, (2008) 55, 2177-2184
    [10.1109/TIE.2008.918637 | BibTeX]
  • Weakly Supervised Learning of a Classifier for Unusual Event Detection
    M. Jäger, C. Knoll, F. A. Hamprecht
    IEEE Transactions on Image Processing, (2008) 17, 1700-1708
    [10.1109/TIP.2008.2001043 | Technical Report | BibTeX]
  • Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI
    B. H. Menze, B. M. Kelm, M. Weber, P. Bachert, F. A. Hamprecht
    Magnetic Resonance in Medicine, (2008) 59, 1457-1466
    [10.1002/mrm.21519 | Technical Report | BibTeX]
  • Nonlinear Analysis of Multi-Dimensional Signals
    C. S. Garbe, K. Krajsek, P. Pavlov, B. Andres, M. Mühlich, I. Stuke, C. Mota, M. Böhme, M. Haker, T. Schuchert, H. Scharr, T. Aach, E. Barth, R. Mester, B. Jähne
    in: Mathematical Methods in Signal Processing and Digital Image Analysis, Springer(2008), 231-288
    [10.1007/978-3-540-75632-3_7 | Technical Report | BibTeX]
  • Analysis of Spectral Data
    M. Kirchner , University of Heidelberg
    PhD Thesis [BibTeX]
  • 2007

  • Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer
    C. Weber, C. M. Zechmann, B. M. Kelm, R. Zamecnik, D. Hendricks, R. Waldherr, F. A. Hamprecht, S. Delorme, P. Bachert, U. Ikinger
    Der Urologe, (2007) 46, 1252
    [10.1007/s00120-007-1488-1 | BibTeX]
  • Pattern Recognition, 29th DAGM Symposium, Heidelberg, Germany, September 12-14, 2007, Proceedings
    [10.1007/978-3-540-74936-3 | BibTeX]
  • Schnelle 3D-Vermessung von Partikeln in Rasterelektronenmiskroskopen mit Hilfe eines Rücksteuerdetektors
    L. Görlitz, M. Singh, P. Schützbach
    Invention Disclosure [BibTeX]
  • Pattern Recognition in the Quantitative Analysis of Vector-Valued Image Data: Diagnostic Systems and Applications
    B. Menze , University of Heidelberg
    PhD Thesis [BibTeX]
  • Modern Concepts for Semi-Supervised Learning and Multidimensional Image Processing
    L. Görlitz , University of Heidelberg
    PhD Thesis [BibTeX]
  • Selection of Local Optical Flow Models by Means of Residual Analysis
    B. Andres, F. A. Hamprecht, C. S. Garbe
    in: Pattern Recognition, Springer(2007) 4713, 72-81
    [10.1007/978-3-540-74936-3_8 | Technical Report | BibTeX]
  • Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields
    L. Görlitz, B. H. Menze, M.-A. Weber, B. M. Kelm, F. A. Hamprecht
    in: Pattern Recognition, Springer(2007) 4713, 224-233
    [10.1007/978-3-540-74936-3_23 | Technical Report | BibTeX]
  • Investigation of a 3D Camera
    M. Frank , University of Heidelberg
    Master Thesis [BibTeX]
  • Processing of Interferometric Data
    S. Trittler , University of Heidelberg
    PhD Thesis [BibTeX]
  • Retention Time Domain Registration of Liquid Chromatography/Mass Spectrometry Data
    B. Saussen , University of Heidelberg
    Master Thesis [BibTeX]
  • Quality Control in Mass Spectrometry
    T. König , University of Heidelberg
    Master Thesis
    [Technical Report | BibTeX]
  • Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East
    B. H. Menze, J. A. Ur
    in: Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland, International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences(2007)
    [Technical Report | BibTeX]
  • An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data
    B. Y. Renard , University of Heidelberg
    Master Thesis [BibTeX]
  • Statistical analysis of spatio-temporal patterns in global NOX satellite data
    M. Hayn , University of Heidelberg
    Master Thesis [BibTeX]
  • Evaluation of Vector-Valued Clinical Image Data Using Probabilistic Graphical Models: Quantification and Pattern Recognition
    B. M. Kelm , University of Heidelberg
    PhD Thesis [BibTeX]
  • Time Series Analysis and Classification with State-Space Models for Industrial Processes and the Life Sciences
    M. Jäger , University of Heidelberg
    PhD Thesis
    [Technical Report | BibTeX]
  • Model Selection in Optical Flow-Based Motion Estimation by Means of Residual Analysis
    B. Andres , University of Heidelberg
    Master Thesis
    [Technical Report | BibTeX]
  • Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification
    B. M. Kelm, B. H. Menze, C. M. Zechmann, K. T. Baudendistel, F. A. Hamprecht
    Magnetic Resonance in Medicine, (2007) 57, 150-159
    [10.1002/mrm.21112 | Technical Report | BibTeX]
  • Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy
    B. H. Menze, W. Petrich, F. A. Hamprecht
    Analytical and Bioanalytical Chemistry, (2007) 387, 1801-1807
    [10.1007/s00216-006-1070-5 | Technical Report | BibTeX]
  • amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R
    M. Kirchner, B. Saussen, H. Steen, J. A. J. Steen, F. A. Hamprecht
    Journal of Statistical Software, (2007) 18, 1-12
    [URL | BibTeX]
  • Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing
    B. H. Menze, S. Muehl, A. G. Sherratt
    in: Broadening Horizons: Multidisciplinary Approaches to Landscape Study, Cambridge Scholars Publishing(2007), 5-29
    [Technical Report | BibTeX]
  • From eigenspots to fisherspots - latent spaces in the nonlinear detection of spot patterns in a highly variable background
    B. H. Menze, B. M. Kelm, F. A. Hamprecht
    in: Advances in data analysis, Springer(2007) 33, 255-262
    [10.1007/978-3-540-70981-7_29 | Technical Report | BibTeX]
  • Generalizing the Abbott-Firestone curve by two new surface descriptors
    J. Schmähling, F. A. Hamprecht
    Wear, (2007) 262, 1360-1371
    [10.1016/j.wear.2007.01.025 | Technical Report | BibTeX]
  • 2006

  • Statistical characterization of technical surface microstructure
    J. Schmähling , University of Heidelberg
    PhD Thesis
    [Technical Report | BibTeX]
  • Zuordnung von Partikeln zu Entstehungsprozessen
    L. Görlitz, F. A. Hamprecht, M. Staudacher
    Invention Disclosure [BibTeX]
  • Data Mining auf multidimensionalen und komplexen Daten in der industriellen Bildverarbeitung
    S. Hader , University of Heidelberg
    PhD Thesis [BibTeX]
  • Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images
    B. H. Menze, B. M. Kelm, D. Heck, M. P. Lichy, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin, (2006), 31-36
    [10.1007/3-540-32137-3_7 | BibTeX]
  • Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients
    C. Zechmann, B. M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Röll, S. Delorme, F. A. Hamprecht, P. Bachert
    in: Proceedings of the 16th ISMRM, (2006) [BibTeX]
  • Discontinuity Preserving Filtering of Spectral Images
    K. Lerch , University of Heidelberg
    Master Thesis [BibTeX]
  • Single tone frequency estimation from very few sampling points
    M. Wieler , University of Heidelberg
    Master Thesis [BibTeX]
  • Color image processing
    M. F. Carlsohn, B. H. Menze, B. M. Kelm, F. A. Hamprecht, A. Kercek, R. Leitner, G. Polder [BibTeX]
  • CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.
    B. M. Kelm, B. H. Menze, T. Neff, C. M. Zechmann, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, Springer(2006), 51-55
    [10.1007/3-540-32137-3_7 | Technical Report | URL | BibTeX]
  • Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM
    B. M. Kelm, N. Müller, B. H. Menze, F. A. Hamprecht
    in: Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis), IEEE Computer Society(2006), 96-103
    [10.1109/CVPRW.2006.41 | Technical Report | BibTeX]
  • Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning.
    B. M. Kelm, C. Pal, A. McCallum
    in: ICPR 2006, (2006) 2, 828-832
    [10.1109/ICPR.2006.384 | Technical Report | BibTeX]
  • Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren
    M. P. Lichy, P. Bachert, F. A. Hamprecht, M.-A. Weber, J. Debus, D. Schulz-Ertner, H.-U. Kauczor, H.-P. Schlemmer
    Zeitung für Röntgenforschung, (2006) 178, 627-633
    [10.1055/s-2006-926744 | BibTeX]
  • Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor
    B. H. Menze, M. P. Lichy, P. Bachert, B. M. Kelm, H. P. Schlemmer, F. A. Hamprecht
    NMR in Biomedicine, (2006) 19, 599-609
    [10.1002/nbm.1041 | Technical Report | BibTeX]
  • Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model
    B. H. Menze, J. A. Ur, A. G. Sherratt
    Photgrammetric Engineering & Remote Sensing, (2006) 3, 321-327
    [Technical Report | BibTeX]
  • A three-dimensional measure of surface roughness based on mathematical morphology
    J. Schmähling, F. A. Hamprecht, D. M. P. Hoffmann
    International Journal of Machine Tools and Manufacture, (2006) 46 (14), 1764-1769
    [10.1016/j.ijmachtools.2005.12.003 | Technical Report | BibTeX]
  • A QCAR-approach to materials modelling
    S. Sieg, B. Stutz, T. Schmidt, F. A. Hamprecht, W. F. Maier
    Journal of Molecular Modeling, (2006) 12, 611-619
    [10.1007/s00894-005-0068-9 | Technical Report | BibTeX]
  • 2005

  • Verfahren und Prüfkörper zur Bestimmung der Reinigungswirkung in einem Ultraschallbild
    L. Strobel J. Görlitz, M. Staudacher
    Invention Disclosure [BibTeX]
  • On the Application of Multiscale Motion Estimation in Intravascular Elastography
    T. König, F. A. Hamprecht, H. Kücherer
    University of Heidelberg [BibTeX]
  • Report about VOCs Dataset's Analysis based on Random Forests
    H. Zhang, F. A. Hamprecht, A. Amann
    in: Proceedings of the HPC-Asia05, IEEE Computer Society Press(2005), 603-607 [BibTeX]
  • Partikel-Verfolgung beim Laserschweißen mit dem Kalman-Filter
    S. Humbert , University of Heidelberg
    Master Thesis [BibTeX]
  • Detektion von Partikeln in Intensitätsbildern mit Hilfe eines morphologischen Skalenraumes
    L. Görlitz, F. A. Hamprecht, M. Staudacher
    Invention Disclosure [BibTeX]
  • Bayesian Estimation for White Light Interferometry
    M. Hissmann , University of Heidelberg
    PhD Thesis
    [URL | BibTeX]
  • Bayesian surface estimation for white light interferometry
    M. Hissmann, F. A. Hamprecht
    Optical Engineering, (2005) 44, 1-9
    [10.1117/1.829651 | Technical Report | BibTeX]
  • Automatisierte Klassifikation von Laserschweißprozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen
    M. Jäger, C. Knoll, F. A. Hamprecht
    Invention Disclosure [BibTeX]
  • Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen
    B. M. Kelm, B. H. Menze, F. A. Hamprecht
    in: GMA-Kongress 2005, Automation als interdisziplinäre Herausforderung, (2005) 1883, 457-466
    [Technical Report | BibTeX]
  • Optimal lattices for sampling
    H. R. Künsch, E. Agrell, F. A. Hamprecht
    IEEE Transactions on Information Theory, (2005) 51, 634-647
    [10.1109/TIT.2004.840864 | BibTeX]
  • Tell Spotting - Surveying Near Eastern Settlement Mounds from Space
    B. H. Menze, J. A. Ur, A. G. Sherratt
    in: Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy, (2005), 217-223
    [Technical Report | BibTeX]
  • 2004

  • Classification of in vivo magnetic resonance spectra
    B. H. Menze, M. Wormit, P. Bachert, M. Lichy, H.-P. Schlemmer, F. A. Hamprecht
    in: Classification in ubiquitous challenge: Proceedings of the GfKl 2004, Springer(2004), 362-369 [BibTeX]
  • Statistische Karten in der Magnetresonanzspektroskopie
    L. Feistner , University of Heidelberg
    Master Thesis [BibTeX]
  • Proximity Graphs for Nonlinear Dimension Reduction
    D. Heck , University of Heidelberg
    Master Thesis [BibTeX]
  • Spatial extensions to self-modeling curve resolution
    M. Kirchner , University of Heidelberg
    Master Thesis [BibTeX]
  • Vom Bild zur Information
    F. A. Hamprecht, B. Jähne
    Ruperto Carola - Forschungsmagazin der Universität Heidelberg, (2004) 03.2004, 9-12
    [http://www.uni-heidelberg.de/presse/ruca/ruca04-03 | BibTeX]
  • Two-Stage Classification with Automatic Feature Selection for an Industrial Application
    S. Hader, F. A. Hamprecht
    in: Classification, the ubiquitous challenge: Proceedings of GfKl 2004, Springer(2004), 137-144 [BibTeX]
  • Classification
    F. A. Hamprecht
    in: Practical Handbook on Image Processing for Scientific and Technical Applications, CRC Press(2004), 509-519 [BibTeX]
  • Klassifikation von Magnetresonanzspektren
    B. H. Menze , University of Heidelberg
    Master Thesis [BibTeX]
  • Nonparametric Smoothing of Height maps using ``Confidence'' values
    J. Restle, M. Hissmann, F. A. Hamprecht
    Optical Engineering, (2004) 43, 866-871
    [10.1117/1.1666622 | BibTeX]
  • 2003

  • System Concept for Image Sequence Classification in Laser Welding
    S. Hader
    in: Pattern Recognition, Springer(2003) 2781, 212-219
    [10.1007/b12010 | BibTeX]
  • A new approach for defect detection in X-ray CT images
    H. Eisele, F. A. Hamprecht
    in: Pattern Recognition, Springer(2003) 2449, 345-352
    [10.1007/3-540-45783-6 | BibTeX]
  • Efficient Density Clustering
    S. Hader, F. A. Hamprecht
    in: Between Data Science and Applied Data Analysis, Springer(2003), 39-48
    [10.1007/b13634 | BibTeX]
  • Exploring a space of materials: spatial sampling design and subset selection
    F. A. Hamprecht, E. Agrell
    in: Experimental Design for Combinatorial and High Throughput Materials Development, Wiley(2003)
    [Technical Report | BibTeX]
  • Bayessche Schätzung von Höhenkarten aus der Weiß licht-Interferometrie
    M. Hissmann, F. A. Hamprecht
    in: Oberflächenmesstechnik 2003, (2003), 187--196 [BibTeX]
  • Optimierung der Weißlichtinterferometrie für Applikationen der industriellen Qualitätskontrolle
    J. Restle , University of Heidelberg
    PhD Thesis [BibTeX]
  • 2002

  • Für Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion
    B. Jähne, M. Brocke, H. Eisele, S. Hader, F. A. Hamprecht, W. Happold, F. Raisch, J. Restle
    Qualität und Zuverlässigkeit, (2002) 47, 1154-1159 [BibTeX]
  • Automated defect detection and evaluation in X-ray CT images
    H. Eisele , University of Heidelberg
    PhD Thesis
    [URL | BibTeX]
  • A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution
    P. J. Gee, F. A. Hamprecht, L. D. Schuler, W. F. van Gunsteren, E. Duchardt, H. Schwalbe, M. Albert, D. Seebach
    Helv. Chim. Acta, (2002) 85, 618-632 [BibTeX]
  • Chemical library subset selection algorithms: a unified derivation using spatial statistics
    F. A. Hamprecht, W. Thiel, W. F. van Gunsteren
    Journal of Chemical Information and Computer Sciences, (2002) 42, 414-428 [BibTeX]
  • 2001

  • Horizontal scannendes Weißlicht-Interferometer
    J. Restle
    Invention Disclosure [BibTeX]
  • Fibrillation power: An alternative method of ECG spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation
    F. A. Hamprecht, U. Achleitner, A. C. Krismer, K. H. Lindner, V. Wenzel, H.-U. Strohmenger, W. Thiel, W. F. van Gunsteren
    Resuscitation, (2001) 50, 287-296 [BibTeX]
  • Preliminary results on the prediction of countershock success with fibrillation power
    F. A. Hamprecht, D. Jost, M. Rüttimann, F. Calamai, J. J. Kowalski
    Resuscitation, (2001) 50, 297-299 [BibTeX]
  • A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization
    F. A. Hamprecht, C. Peter, X. Daura, W. Thiel, W. F. van Gunsteren
    Journal of Chemical Physics, (2001) 114, 2079-2089 [BibTeX]
  • 1998

  • Theoretical Investigation of NMR Chemical Shifts and Reactivities of Oxovanadium (V) Compounds
    M. Bühl, F. A. Hamprecht
    Journal of Computational Chemistry, (1998) 19, 113-122 [BibTeX]
  • Development and assessment of new exchange-correlation functionals
    F. A. Hamprecht, A. J. Cohen, D. J. Tozer, N. C. Handy
    Journal of Chemical Physics, (1998) 109, 6264-6271
    [10.1063/1.477267 | BibTeX]
  • Threedimensional Quantitative Similarity-Activity Relationships (3DQSiAR) from SEAL Similarity Matrices
    H. Kubinyi, F. A. Hamprecht, T. Mietzner
    Journal of Medicinal Chemistry, (1998) 41, 2553-2564 [BibTeX]
  • 1997

  • Generation of pseudo-native protein structures for threading
    F. A. Hamprecht, W. R. P. Scott, W. F. van Gunsteren
    Proteins, (1997) 28, 522-529 [BibTeX]

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