Ruprecht-Karls-Universität Heidelberg

Publications


Category Year Author

    2015

  • Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
    J. Calì, D. J. Boges, G. R. Holst, A. Kreshuk, F. A. Hamprecht, M. Srinivasan, H. Lehväslaiho, P. J. Magistretti
    Journal of Comparative Neurology, (2015)
    [10.1002/cne.23852]
    @Article{cali_15_three-dimensional,
      Title                    = {Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues},
      Author                   = {Calì, C. and, Baghabra,
  • Multi-Target Tracking with Probabilistic Graphical Models
    Schiegg , University of Heidelberg
    PhD Thesis
    @PhdThesis{schiegg_2015_multi-target,
      Title                    = {Multi-Target Tracking with Probabilistic Graphical Models},
      Author                   = {Schiegg},
      School                   = {University of Heidelberg},
      Year
  • Cell event detection in phase-contrast microscopy sequences from few annotations
    M. Kandemir, F. A. Hamprecht
    in: MICCAI. Proceedings, (2015)
    @InProceedings{kandemir_15_cell,
      Title                    = {Cell event detection in phase-contrast microscopy sequences from few annotations},
      Author                   = {Kandemir, M. and Hamprecht, F. A.},
      Booktitle                = {MICCAI. Pr
  • Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain
    A. Kreshuk, J. Funke, A. Cardona, F. A. Hamprecht
    in: MICCAI. Proceedings, (2015)
    @InProceedings{kreshuk_15_who,
      Title                    = {Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain},
      Author                   = {Kreshuk, A. and Funke, J. and Cardona, A. and Hamprecht, F. A.},
      Bo
  • Asymmetric transfer learning with deep Gaussian processes
    M. Kandemir
    in: ICML. Proceedings, (2015)
    [Technical Report]
    @InProceedings{kandemir_15_asymmetric,
      Title                    = {Asymmetric transfer learning with deep Gaussian processes},
      Author                   = {Kandemir, M.},
      Booktitle                = {ICML. Proceedings, in press},
      Year
  • Learning to Segment: Training Hierarchical Segmentation under a Topological Loss
    J. Funke, F. A. Hamprecht, C. Zhang
    ##: MICCAI. Proceedings, Part III (2015)
    [10.1007/978-3-319-24574-4]
    @Conference{funke_15_learning,
      Title                    = {Learning to Segment: Training Hierarchical Segmentation under a Topological Loss},
      Author                   = {Funke, J. and Hamprecht, F. A. and Zhang, C.},
      Booktitle                = {M
  • Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves
    A. Kreshuk, R. Walecki, U. Köthe, M. Gierthmühlen, D. Plachta, C. Genoud, K. Haastert-Talini, F. A. Hamprecht
    Journal of Microscopy, (2015) 000, 1-12
    [10.1111/jmi.12266]
    @Article{kreshuk_15_automated,
      Title                    = {Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves},
      Author                   = {Kreshuk, A. and Walecki, R. and K\"othe, U. an
  • A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems
    J. H. Kappes, B. Andres, F. A. Hamprecht, C. Schnörr, S. Nowozin, D. Batra, S. Kim, B. X. Kausler, T. Kröger, J. Lellmann, N. Komodakis, B. Savchynskyy, C. Rother
    International Journal of Computer Vision, (2015), 1-30
    [10.1007/s11263-015-0809-x | Technical Report]
    @Article{kappes_15_comparative,
      Title                    = {A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems},
      Author                   = {Kappes, J. H. and Andres, B. and Hamprecht, F. A. and S
  • Fusion Moves for Correlation Clustering
    T. Beier, F. A. Hamprecht, J. H. Kappes
    in: CVPR. Proceedings, (2015), 3507-3516
    [Technical Report]
    @InProceedings{beier_15_fusion,
      Title                    = {Fusion Moves for Correlation Clustering},
      Author                   = {Beier, T. and Hamprecht, F. A. and Kappes, J. H.},
      Booktitle                = {CVPR. Proceedings},
      Year
  • Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors
    N. Krasowski, T. Beier, G. W. Knott, U. Köthe, F. A. Hamprecht, A. Kreshuk
    in: ISBI. Proceedings, (2015), 536-539
    [10.1109/ISBI.2015.7163929 | Technical Report]
    @InProceedings{krasowski_15_improving,
      Title                    = {Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors},
      Author                   = {Krasowski, N. and Beier, T. and Knott, G. W. and K\
  • Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models
    M. Schiegg, B. Heuer, C. Haubold, S. Wolf, U. Köthe, F. A. Hamprecht
    in: ISBI. Proceedings, (2015), 394-398
    [10.1109/ISBI.2015.7163895 | Technical Report]
    @InProceedings{schiegg_15_proof-reading,
      Title                    = {Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models},
      Author                   = {Schiegg, M. and Heuer, B. and Haubold, C. and Wolf, S. and K\"o
  • Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals
    J .P. Kauppi, M. Kandemir, V .M. Saarinen, L. Hirvenkari, L. Parkkonen, A. Klami, R. Hari, S. Kaski
    NeuroImage, (2015)
    [10.1016/j.neuroimage.2014.12.079 | Technical Report]
    @Article{kauppi_15_towards,
      Title                    = {Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals},
      Author                   = {Kauppi, J .P. and Kandemir, M. and Saarinen, V .M. and Hirvenkar
  • Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell
    M. Schiegg, P. Hanslovsky, C. Haubold, U. Köthe, L. Hufnagel, F. A. Hamprecht
    Bioinformatics, (2015) 31, 948-956
    [10.1093/bioinformatics/btu764 | Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @Article{schiegg_15_graphical,
      Title                    = {Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell},
      Author                   = {Schiegg, M. and Hanslovsky, P. and Haubold, C. and K\"othe, U. and Hufnagel, L. an
  • 2014

  • Neural Networks: Optimization and Applications
    G. Urban , University of Heidelberg
    Master Thesis
    @MastersThesis{urban_14_neural,
      Title                    = {Neural Networks: Optimization and Applications},
      Author                   = {Urban, G.},
      School                   = {University of Heidelberg},
      Year                     = {2014},
    
    
  • Sparse Space-Time Deconvolution for Calcium Image Analysis
    F. Diego, F. A. Hamprecht
    in: NIPS. Proceedings, (2014), 64-72
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @InProceedings{diego_14_sparse,
      Title                    = {Sparse Space-Time Deconvolution for Calcium Image Analysis},
      Author                   = {Diego, F. and Hamprecht, F. A.},
      Booktitle                = {NIPS. Proceedings},
      Year
  • Hierarchical Planar Correlation Clustering for Cell Segmentation
    J. Yarkony, C. Zhang, C. C. Fowlkes
    in: EMMCVPR. Proceedings, Springer(2014) 8932, 492-504
    [10.1007/978-3-319-14612-6_36 | Technical Report]
    @InProceedings{yarkony_14_hierarchical,
      Title                    = {Hierarchical Planar Correlation Clustering for Cell Segmentation},
      Author                   = {Yarkony, J. and Zhang, C. and Fowlkes, C. C.},
      Booktitle                = {EMMCVPR.
  • Semi-Global Matching: A Principled Derivation in Terms of Message Passing
    A. Drory, C. Haubold, S. Avidan, F. A. Hamprecht
    in: GCPR. Proceedings, (2014), 43-53
    [10.1007/978-3-319-11752-2_4 | Technical Report]
    @InProceedings{drory_14_semi-global,
      Title                    = {Semi-Global Matching: A Principled Derivation in Terms of Message Passing},
      Author                   = {Drory, A. and Haubold, C. and Avidan, S. and Hamprecht, F. A.},
      Booktitle
  • Casting Random Forests as Artificial Neural Networks (and Profiting from It)
    J. Welbl
    in: GCPR. Proceedings, (2014), 765-771
    [10.1007/978-3-319-11752-2_66 | Technical Report]
    @InProceedings{welbl_14_casting,
      Title                    = {Casting Random Forests as Artificial Neural Networks (and Profiting from It)},
      Author                   = {Welbl, J.},
      Booktitle                = {GCPR. Proceedings},
      Year
  • ilastik for Multi-modal Brain Tumor Segmentation
    J. Kleesiek, A. Biller, G. Urban, U. Köthe, M. Bendszus, F. A. Hamprecht
    in: MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rd place, (2014)
    [Technical Report]
    @InProceedings{kleesiek_14_ilastik,
      Title                    = {{ilastik} for Multi-modal Brain Tumor Segmentation},
      Author                   = {Kleesiek, J. and Biller, A. and Urban, G. and K\"othe, U. and Bendszus, M. and Hamprecht, F. A.},
      Boo
  • Multi-modal Brain Tumor Segmentation using Deep Convolutional Neural Networks
    G. Urban, M. Bendszus, F. A. Hamprecht, J. Kleesiek
    in: MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winning contribution, (2014), 31-35
    []
    @InProceedings{urban_14_multi-modal,
      Title                    = {Multi-modal Brain Tumor Segmentation using Deep Convolutional Neural Networks},
      Author                   = {Urban, G. and Bendszus, M. and Hamprecht, F. A. and Kleesiek, J.},
      Bookti
  • Detecting individual body parts improves mouse behavior classification
    C. Decker, F. A. Hamprecht
    in: Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). Proceedings, (2014)
    [Technical Report]
    @InProceedings{decker_14_detecting,
      Title                    = {Detecting individual body parts improves mouse behavior classification},
      Author                   = {Decker, C. and Hamprecht, F. A.},
      Booktitle                = {Workshop on visual
  • Learning-based Segmentation for Connectomics
    T. Kröger , University of Heidelberg
    PhD Thesis
    @PhdThesis{kroeger-14_learning-based,
      Title                    = {Learning-based Segmentation for Connectomics},
      Author                   = {Kr\"oger, T.},
      School                   = {University of Heidelberg},
      Year                     = {2014
  • Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability
    X. Lou, M. Schiegg, F. A. Hamprecht
    IEEE Transactions on Medical Imaging, (2014) 33 (4), 849-860
    [10.1109/TMI.2013.2296937]
    @Article{lou_14_active,
      Title                    = {Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability},
      Author                   = {Lou, X. and Schiegg, M. and Hamprecht, F. A.},
      Journal                  = {IEEE Tra
  • Asymmetric Cuts: Joint Image Labeling and Partitioning
    T. Kröger, J. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: GCPR. Proceedings, (2014) 8753
    [10.1007/978-3-319-11752-2_16 | Technical Report]
    @InProceedings{kroeger_14_asymmetric,
      Title                    = {Asymmetric Cuts: Joint Image Labeling and Partitioning},
      Author                   = {Kr\"oger, T. and Kappes, J. H. and Beier, T. and K\"othe, U. and Hamprecht, F. A.},
      Booktitle
  • Interactive Segmentation, Uncertainty and Learning
    C. Straehle , University of Heidelberg
    PhD Thesis
    @PhdThesis{straehle_14_interactive,
      Title                    = {Interactive Segmentation, Uncertainty and Learning},
      Author                   = {Straehle, C.},
      School                   = {University of Heidelberg},
      Year                     = {
  • Multiple Instance Learning with Random Forests and Applications in Industrial Optical Inspection
    M. Wieler , University of Heidelberg
    PhD Thesis
    @PhdThesis{wieler_14_semi-supervised,
      Title                    = {Multiple Instance Learning with Random Forests and Applications in Industrial Optical Inspection},
      Author                   = {Wieler, M.},
      School                   = {University o
  • Structured Learning from Cheap Data
    X. Lou, M. Kloft, G. Rätsch, F. A. Hamprecht
    in: Advanced Structured Prediction, The MIT Press(2014)
    [Technical Report]
    @InCollection{lou_14_structured,
      Title                    = {Structured Learning from Cheap Data},
      Author                   = {Lou, X. and Kloft, M. and R\"atsch, G. and Hamprecht, F. A.},
      Booktitle                = {Advanced Structured Predictio
  • Cell detection and segmentation using correlation clustering
    C. Zhang, J. Yarkony, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014), 9-16
    [10.1007/978-3-319-10404-1_2 | Technical Report]
    @InProceedings{zhang_14_cell,
      Title                    = {Cell detection and segmentation using correlation clustering},
      Author                   = {Zhang, C. and Yarkony, J. and Hamprecht, F. A.},
      Booktitle                = {MICCAI. Proceedings}
  • Instance Label Prediction by Dirichlet Process Multiple Instance Learning
    M. Kandemir, F. A. Hamprecht
    in: UAI. Proceedings, in press, (2014)
    [Technical Report]
    @InProceedings{kandemir_14_instance,
      Title                    = {Instance Label Prediction by Dirichlet Process Multiple Instance Learning},
      Author                   = {Kandemir, M. and Hamprecht, F. A.},
      Booktitle                = {UAI. Proceedi
  • Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures
    M. Kandemir, J. C. Rubio, U. Schmidt, J. Welbl, B. Ommer, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014), 154-161
    [10.1007/978-3-319-10470-6_20 | Technical Report]
    @InProceedings{kandemir_14_event,
      Title                    = {Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures},
      Author                   = {Kandemir, M. and Rubio, J. C. and Schmidt, U. and Welbl, J. and Ommer,
  • Computer-aided diagnosis from weak supervision: A benchmarking study
    M. Kandemir, F. A. Hamprecht
    Computerized Medical Imaging and Graphics, (2014) 42, 44-50
    [10.1016/j.compmedimag.2014.11.010 | Technical Report]
    @Article{kandemir_14_computer-aided,
      Title                    = {Computer-aided diagnosis from weak supervision: A benchmarking study},
      Author                   = {Kandemir, M. and Hamprecht, F. A.},
      Journal                  = {Computerized Medic
  • SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy
    U. Köthe, F. Herrmannsdörfer, I. Kats, F. A. Hamprecht
    Histochemistry and Cell Biology, (2014) 141, 613-627
    [10.1007/s00418-014-1211-4 | Technical Report]
    @Article{koethe_14_simplestorm,
      Title                    = {SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy},
      Author                   = {K\"othe, U. and Herrmannsd\"orfer, F. and Kats, I. and Hamprecht, F.
  • Information-Geometric Optimization for Image Segmentation
    F. Blumenthal , University of Heidelberg
    Master Thesis
    @MastersThesis{blumenthal_14_information-geometric,
      Title                    = {Information-Geometric Optimization for Image Segmentation},
      Author                   = {Blumenthal, F.},
      School                   = {University of Heidelberg},
      Yea
  • Graph based image analysis
    T. Beier , University of Heidelberg
    Master Thesis
    @MastersThesis{beier_14_graph,
      Title                    = {Graph based image analysis},
      Author                   = {Beier, T.},
      School                   = {University of Heidelberg},
      Year                     = {2014},
    
      Crossref
  • Empowering multiple instance histopathology cancer diagnosis by cell graphs
    M. Kandemir, C. Zhang, F. A. Hamprecht
    in: MICCAI. Proceedings, Springer(2014) 8674, 228-235
    [10.1007/978-3-319-10470-6_29 | Technical Report]
    @InProceedings{kandemir_14_empowering,
      Title                    = {Empowering multiple instance histopathology cancer diagnosis by cell graphs},
      Author                   = {Kandemir, M. and Zhang, C. and Hamprecht, F. A.},
      Booktitle
  • Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites
    B. Maco, M. Cantoni, A. Holtmaat, A. Kreshuk, F. A. Hamprecht, G. Knott
    Nature Protocols, (2014) 9, 1354-1366
    [10.1038/nprot.2014.101]
    @Article{maco_14_semiautomated,
      Title                    = {Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites},
      Author                   = {Maco, B. and Cantoni, M. and Holtmaat, A. and Kreshuk, A. and Hamprecht,
  • Multiple instance learning with response-optimized random forests
    C. Straehle, M. Kandemir, U. Köthe, F. A. Hamprecht
    in: ICPR. Proceedings, (2014), 3768 - 3773
    [10.1109/ICPR.2014.647 | Technical Report]
    @InProceedings{straehle_14_multiple,
      Title                    = {Multiple instance learning with response-optimized random forests},
      Author                   = {Straehle, C. and Kandemir, M. and K\"othe, U. and Hamprecht, F. A.},
      Booktitle
  • Tracking indistinguishable translucent objects over time using weakly supervised structured learning
    L. Fiaschi, F. Diego, K. Gregor, M. Schiegg, U. Köthe, M. Zlatic, F. A. Hamprecht
    in: CVPR. Proceedings, (2014), 2736 - 2743
    [10.1109/CVPR.2014.356 | Technical Report]
    @InProceedings{fiaschi_14_tracking,
      Title                    = {Tracking indistinguishable translucent objects over time using weakly supervised structured learning},
      Author                   = {Fiaschi, L. and Diego, F. and Gregor, K. and Schiegg,
  • Cut, Glue & Cut: A Fast, Approximate Solver for Multicut Partitioning
    T. Beier, T. Kröger, J. H. Kappes, U. Köthe, F. A. Hamprecht
    in: CVPR. Proceedings, (2014), 73-80
    [10.1109/CVPR.2014.17 | Technical Report]
    @InProceedings{beier_14_cut,
      Title                    = {Cut, Glue \& Cut: A Fast, Approximate Solver for Multicut Partitioning},
      Author                   = {Beier, T. and Kr\"oger, T. and Kappes, J. H. and K\"othe, U. and Hamprecht, F. A.},
      Book
  • Multi-task and multi-view learning of user state
    M. Kandemir, A. Klami, M. Gonen, A. Vetek, S. Kaski
    Neurocomputing, (2014) 139, 97-106
    [10.1016/j.neucom.2014.02.057 | Technical Report]
    @Article{kandemir_14_multi-task,
      Title                    = {Multi-task and multi-view learning of user state},
      Author                   = {Kandemir, M. and Klami, A. and Gonen, M. and Vetek, A. and Kaski, S.},
      Journal                  = {Neuroco
  • Automated Animal Behavior Classification
    C. Decker , University of Heidelberg
    Master Thesis
    @MastersThesis{decker_automated,
      Title                    = {Automated Animal Behavior Classification},
      Author                   = {Decker, C.},
      School                   = {University of Heidelberg},
      Year                     = {2014},
    
      Cro
  • Digital Pathology: Multiple instance learning can detect Barrett's cancer
    M. Kandemir, A. Feuchtinger, A. Walch, F. A. Hamprecht
    in: ISBI. Proceedings, (2014), 1348 - 1351
    [10.1109/ISBI.2014.6868127 | Technical Report]
    @InProceedings{kandemir_14_digital,
      Title                    = {Digital Pathology: Multiple instance learning can detect Barrett's cancer},
      Author                   = {Kandemir, M. and Feuchtinger, A. and Walch, A. and Hamprecht, F. A.},
      Booktitl
  • Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation
    R. Lindner, X. Lou, J. Reinstein, R. L. Shoeman, Hamprecht F. A., A. Winkler
    Journal of The American Society for Mass Spectrometry, (2014) 25, 1018-1028
    [10.1007/s13361-014-0850-y | Technical Report]
    @Article{lindner_14_hexicon,
      Title                    = {Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation},
      Author                   = {Lindner, R. and Lou, X. an
  • Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks
    A. Kreshuk, U. Köthe, E. Pax, D. D. Bock, F. A. Hamprecht
    PLoS ONE, (2014) 9, 2
    [10.1371/journal.pone.0087351 | Technical Report]
    @Article{kreshuk_14_automated,
      Title                    = {Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks},
      Author                   = {Kreshuk, A. and K\"othe, U. and Pax, E. and Bock, D. D. and Hamp
  • Yeast Cell Detection and Segmentation in Bright Field Microscopy
    C. Zhang, F. Huber, M. Knop, F. A. Hamprecht
    in: ISBI. Proceedings, IEEE Computer Society(2014), 1267-1270
    [10.1109/ISBI.2014.6868107 | Technical Report]
    @InProceedings{zhang_14_yeast,
      Title                    = {Yeast Cell Detection and Segmentation in Bright Field Microscopy},
      Author                   = {Zhang, C. and Huber, F. and Knop, M. and Hamprecht, F. A.},
      Booktitle                = {ISBI
  • Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue
    B. F. Tek, T. Kröger, S. Mikula, F. A. Hamprecht
    in: ISBI. Proceedings, (2014), 69-72
    [10.1109/ISBI.2014.6867811 | Technical Report]
    @InProceedings{tek_14_automated,
      Title                    = {Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue},
      Author                   = {Tek, B. F. and Kr\"oger, T. and Mikula, S. and Hamprecht, F. A.},
      Bo
  • 2013

  • Weakly supervised learning: Active schemes and partial annotations
    B. Xu , University of Heidelberg
    Master Thesis
    @MastersThesis{xu_13_weakly,
      Title                    = {Weakly supervised learning: Active schemes and partial annotations},
      Author                   = {Xu, B.},
      School                   = {University of Heidelberg},
      Year
  • Advanced Cell Tacking-by-Assignment
    P. Hanslovsky , University of Heidelberg
    Master Thesis
    @MastersThesis{hanslovsky_13_advanced,
      Title                    = {Advanced Cell Tacking-by-Assignment},
      Author                   = {Hanslovsky, P.},
      School                   = {University of Heidelberg},
      Year                     = {2013},
    
    
  • Large-Scale Automatic Reconstruction of Myelianated Axons and Detection of the Nodes of Ranvier
    R. Walecki , University of Heidelberg
    Master Thesis
    @MastersThesis{walecki_13_large-scale,
      Title                    = {Large-Scale Automatic Reconstruction of Myelianated Axons and Detection of the Nodes of Ranvier},
      Author                   = {Walecki, R.},
      School                   = {University
  • Learning Based Biological Image Analysis
    L. Fiaschi , University of Heidelberg
    PhD Thesis
    @PhdThesis{fiaschi_13_learning,
      Title                    = {Learning Based Biological Image Analysis},
      Author                   = {Fiaschi, L.},
      School                   = {University of Heidelberg},
      Year                     = {2013},
    
      Own
  • Weakly supervised learning of image partitioning using decision trees with structured split criteria
    C. Straehle, U. Köthe, F. A. Hamprecht
    in: ICCV 2013. Proceedings, (2013), 1849-1856
    [10.1109/ICCV.2013.232 | Technical Report]
    @InProceedings{straehle_13_weakly,
      Title                    = {Weakly supervised learning of image partitioning using decision trees with structured split criteria},
      Author                   = {Straehle, C. and K\"othe, U. and Hamprecht, F. A.},
    
  • Learning Multi-Level Sparse Representation
    F. Diego, F. A. Hamprecht
    in: NIPS. Proceedings, (2013)
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @InProceedings{diego_13_learning2,
      Title                    = {Learning Multi-Level Sparse Representation},
      Author                   = {Diego, F. and Hamprecht, F. A.},
      Booktitle                = {NIPS. Proceedings},
      Year                     =
  • Conservation Tracking
    M. Schiegg, P. Hanslovsky, B. X. Kausler, L. Hufnagel, F. A. Hamprecht
    in: ICCV 2013. Proceedings, (2013), 2928--2935
    [10.1109/ICCV.2013.364 | Technical Report]
    @InProceedings{schiegg_13_conservation,
      Title                    = {Conservation Tracking},
      Author                   = {Schiegg, M. and Hanslovsky, P. and Kausler, B. X. and Hufnagel, L. and Hamprecht, F. A.},
      Booktitle                = {ICCV 201
  • SimpleSTORM an Efficient Selfcalibrating Reconstruction Algorithm for Single and Multi-Channel Localisation Microscopy
    F. Herrmannsdörfer , University of Heidelberg
    Master Thesis
    @MastersThesis{roeder_13_simplestorm,
      Title                    = {SimpleSTORM an Efficient Selfcalibrating Reconstruction Algorithm for Single and Multi-Channel Localisation Microscopy},
      Author                   = {Herrmannsd\"orfer, F.},
      School
  • Tracking-by-Assignment as a Probabilistic Graphical Model with Applications in Developmental Biology
    B. Kausler , University of Heidelberg
    PhD Thesis
    @PhdThesis{kausler_13_tracking,
      Title                    = {Tracking-by-Assignment as a Probabilistic Graphical Model with Applications in Developmental Biology},
      Author                   = {Kausler, B.},
      School                   = {University of
  • Active Learning: New Approaches, and Industrial Applications
    J. Röder , University of Heidelberg
    PhD Thesis
    @PhdThesis{roeder_13_active,
      Title                    = {Active Learning: New Approaches, and Industrial Applications},
      Author                   = {R\"oder, J.},
      School                   = {University of Heidelberg},
      Year                     =
  • Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
    B. Maco, A. Holtmaat, M. Cantoni, A. Kreshuk, C. N. Straehle, F. A. Hamprecht, G. W. Knott
    PloS one, (2013) 8 (2)
    [10.1371/journal.pone.0057405]
    @Article{maco_13_correlative,
      Title                    = {Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons},
      Author                   = {Maco, B. and Holtmaat, A. and Cantoni, M. and Kreshuk, A. and
  • Automated Processing of Zebrafish Imaging Data: A Survey
    R. Mikut, T. Dickmeis, W. Driever, P. Geurts, F. A. Hamprecht, B. X. Kausler, M. Ledesma-Carbayo, R. Marée, K. Mikula, P. Pantazis, O. Ronneberger, A. Santos, R. Stotzka, U. Strähle, N. Peyriéras
    Zebrafish, (2013) 10 (3)
    [10.1089/zeb.2013.0886]
    @Article{mikut_13_automated,
      Title                    = {Automated Processing of Zebrafish Imaging Data: A Survey},
      Author                   = {Mikut, R. and Dickmeis, T. and Driever, W. and Geurts, P. and Hamprecht, F. A. and Kausler, B. X. and Led
  • Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields
    S. Wanner, C. Straehle, B. Goldlücke
    CVPR 2013. Proceedings, (2013), 1011-1018
    [10.1109/CVPR.2013.135]
    @Article{wanner_13_globally,
      Title                    = {Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields},
      Author                   = {Wanner, S. and Straehle, C. and Goldl\"ucke, B.},
      Journal                  = {CV
  • K-smallest Spanning Tree Segmentations
    C. Straehle, S. Peter, U. Köthe, F. A. Hamprecht
    in: German Conference on Pattern Recognition (DAGM/GCPR). Proceedings, Springer(2013), 375-384
    [10.1007/978-3-642-40602-7_40 | Technical Report]
    @InProceedings{straehle_13_ksmallest,
      Title                    = {K-smallest Spanning Tree Segmentations},
      Author                   = {Straehle, C. and Peter, S. and K{\"o}the, U. and Hamprecht, F. A.},
      Booktitle                = {German Conferen
  • Learning to Segment Neurons with Non-local Quality Measures
    T. Kröger, S. Mikula, W. Denk, U. Köthe, F. A. Hamprecht
    in: MICCAI 2013. Proceedings, part II, Springer(2013) 8150, 419-427
    [10.1007/978-3-642-40763-5_52 | Technical Report]
    @InProceedings{kroeger_13_learning,
      Title                    = {Learning to Segment Neurons with Non-local Quality Measures},
      Author                   = {Kr\"oger, T. and Mikula, S. and Denk, W. and K\"othe, U. and Hamprecht, F. A.},
      Booktitle
  • Learning Multi-Level Sparse Representation for Identifying Neuronal Activity
    F. Diego, F. A. Hamprecht
    in: Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of Abstracts., (2013)
    [Technical Report]
    @InProceedings{diego_13_learning,
      Title                    = {Learning Multi-Level Sparse Representation for Identifying Neuronal Activity},
      Author                   = {Diego, F. and Hamprecht, F. A.},
      Booktitle                = {Signal Processin
  • A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems
    J. H. Kappes, B. Andres, F. A. Hamprecht, C. Schnörr, S. Nowozin, D. Batra, K. Sungwoong, B. X. Kausler, J. Lellmann, N. Komodakis, C. Rother
    in: CVPR. Proceedings, (2013)
    [10.1109/CVPR.2013.175 | Technical Report]
    @InProceedings{kappes_13_comparative,
      Title                    = {A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems},
      Author                   = {Kappes, J. H. and Andres, B. and Hamprecht, F. A. and Schn\"
  • Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning
    F. Diego, S. Reichinnek, M. Both, F. A. Hamprecht
    ISBI 2013. Proceedings, (2013), 1058-1061
    [10.1109/ISBI.2013.6556660 | Technical Report]
    @Article{diego_13_automated,
      Title                    = {Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning},
      Author                   = {Diego, F. and Reichinnek, S. and Both, M. and Hamprecht, F. A.},
    
  • Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects
    L. Fiaschi, K. Gregor, B. Afonso, M. Zlatic, F. A. Hamprecht
    ISBI 2013.Proceedings, (2013), 656-659
    [10.1109/ISBI.2013.6556560 | Technical Report]
    @Article{fiaschi_13_keeping,
      Title                    = {Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects},
      Author                   = {Fiaschi, L. and Gregor, K. and Afonso, B. and Zlatic, M. and Hamprecht, F. A.},
    
  • 2012

  • Road Geometry Classification by Adaptive Shape Models
    J. M. Álvarez, T. Gevers, F. Diego, A. M. López
    IEEE Transactions on Intelligent Transportation Systems (ITS), (2012) 99, 1-10
    [10.1109/TITS.2012.2221088]
    @Article{alvarez_12_road,
      Title                    = {Road Geometry Classification by Adaptive Shape Models},
      Author                   = {\'Alvarez, J. M. and Gevers, T. and Diego, F. and L\'opez, A. M.},
      Journal                  = {IEEE Transact
  • Joint Spatio–Temporal Alignment of Sequences
    F. Diego, J. Serrat, A. M. López
    IEEE Transactions on Multimedia (TMM), (2012) PP (99), 1
    [10.1109/TMM.2013.2247390 | Technical Report]
    @Article{diego_12_joint,
      Title                    = {Joint Spatio–Temporal Alignment of Sequences},
      Author                   = {Diego, F. and Serrat, J. and L\'opez, A. M.},
      Journal                  = {IEEE Transactions on Multimedia (TMM)},
      Y
  • You Are Who Knows You: Predicting Links Between Non-Members of Facebook
    E.-Á. Horvát, M. Hanselmann, F. A. Hamprecht, K. A. Zweig
    European Conference on Complex Systems. Proceedings, (2012) 3, 309-315
    [10.1007/978-3-319-00395-5_41 | Technical Report]
    @Article{horvat_12_you,
      Title                    = {You Are Who Knows You: Predicting Links Between Non-Members of Facebook},
      Author                   = {Horv\'at, E.-\'A. and Hanselmann, M. and Hamprecht, F. A. and Zweig, K. A.},
      Journal
  • Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images
    M. Hanselmann, J. Röder, U. Köthe, B. Y. Renard, R. M. A. Heeren, F. A. Hamprecht
    Analytical Chemistry, (2012) 85 (1), 147-155
    [10.1021/ac3023313 | Technical Report]
    @Article{hanselmann_12_active,
      Title                    = {Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images},
      Author                   = {Hanselmann, M. and R\"oder, J. and K\"othe, U. and Renard
  • Automated Analysis of Biomedical Data from Low to High Resolution
    Anna Kreshuk , University of Heidelberg
    PhD Thesis
    @PhdThesis{kreshuk_12_automated,
      Title                    = {Automated Analysis of Biomedical Data from Low to High Resolution},
      Author                   = {Kreshuk, Anna},
      School                   = {University of Heidelberg},
      Year
  • Quality Classification of Microscopic Imagery with Weakly Supervised Learning
    X. Lou, L. Fiaschi, U. Köthe, F. A. Hamprecht
    MICCAI-MLMI. Proceedings, (2012), 176-183
    [10.1007/978-3-642-35428-1_22 | Technical Report]
    @Article{lou_12_quality,
      Title                    = {Quality Classification of Microscopic Imagery with Weakly Supervised Learning},
      Author                   = {Lou, X. and Fiaschi, L. and K\"othe, U. and Hamprecht, F. A.},
      Journal
  • Learning to Count with Regression Forest and Structured Labels
    L. Fiaschi, R. Nair, U. Köthe, F. A. Hamprecht
    ICPR 2012. Proceedings, (2012), 2685-2688
    [Technical Report]
    @Article{fiaschi_12_learning,
      Title                    = {Learning to Count with Regression Forest and Structured Labels},
      Author                   = {Fiaschi, L. and Nair, R. and K\"othe, U. and Hamprecht, F. A.},
      Journal                  = {ICP
  • Active Learning with Distributional Estimates
    J. Röder, K. Kunzmann, B. Nadler, F. A. Hamprecht
    UAI 2012. Proceedings, (2012), 715-725
    [Technical Report]
    @Article{roeder_12_active,
      Title                    = {Active Learning with Distributional Estimates},
      Author                   = {R\"oder, J. and Kunzmann, K. and Nadler, B. and Hamprecht, F. A.},
      Journal                  = {UAI 2012. Proceeding
  • Learning-based Mitotic Cell Detection in Histopathological Images
    C. Sommer, L. Fiaschi, F. A. Hamprecht, D. Gerlich
    ICPR 2012. Proceedings, (2012), 2306-2309
    [Technical Report]
    @Article{sommer_12_learning-based,
      Title                    = {Learning-based Mitotic Cell Detection in Histopathological Images},
      Author                   = {Sommer, C. and Fiaschi, L. and Hamprecht, F. A. and Gerlich, D.},
      Journal
  • The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models
    B. Andres, B. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 7, (2012) 7578, 154-166
    [10.1007/978-3-642-33786-4_12 | Technical Report]
    @InProceedings{andres_12_lazy,
      Title                    = {The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models},
      Author                   = {Andres, B. and Kappes, B. H. and Beier, T. and K\"othe, U. and Hamprech
  • A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness
    B. X. Kausler, M. Schiegg, B. Andres, M. Lindner, U. Köthe, H. Leitte, J. Wittbrodt, L. Hufnagel, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 3, (2012) 7574, 144-157
    [10.1007/978-3-642-33712-3_11 | Technical Report]
    @InProceedings{kausler_12_discrete,
      Title                    = {A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness},
      Author                   = {Kausler, B. X. and Schiegg, M. and Andres, B. and Lindner, M. and K\"
  • Globally Optimal Closed-Surface Segmentation for Connectomics
    B. Andres, T. Kröger, K. L. Briggmann, W. Denk, N. Norogod, G. Knott, U. Köthe, F. A. Hamprecht
    in: ECCV 2012. Proceedings, Part 3, (2012), 778-791
    [10.1007/978-3-642-33712-3_56 | Technical Report]
    @InProceedings{andres_12_globally,
      Title                    = {Globally Optimal Closed-Surface Segmentation for Connectomics},
      Author                   = {Andres, B. and Kr\"oger, T. and Briggmann, K. L. and Denk, W. and Norogod, N. and Knott, G. an
  • Structured Learning from Partial Annotations
    X. Lou, F. A. Hamprecht
    ICML 2012. Proceedings, (2012)
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @Article{lou_12_structured,
      Title                    = {Structured Learning from Partial Annotations},
      Author                   = {Lou, X. and Hamprecht, F. A.},
      Journal                  = {ICML 2012. Proceedings},
      Year                     = {
  • Overcoming species boundaries in peptide identification with BICEPS
    B. Renard, B. Xu, M. Kirchner, F. Zickmann, D. Winter, S. Korten, N. Brattig, A. Tzur, F. A. Hamprecht, H. Steen
    Molecular and Cellular Proteomics, (2012) 11
    [10.1074/mcp.M111.014167]
    @Article{renard_12_overcoming,
      Title                    = {Overcoming species boundaries in peptide identification with BICEPS},
      Author                   = {Renard, B. and Xu, B. and Kirchner, M. and Zickmann, F. and Winter, D. and Korten, S. and Br
  • Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data
    J. Funke, B. Andres, F. A. Hamprecht, A. Cardona, M. Cook
    CVPR 2012. Proceedings, (2012), 1004-1011
    [10.1109/CVPR.2012.6247777 | Technical Report]
    @Article{funke_12_efficient,
      Title                    = {Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data},
      Author                   = {Funke, J. and Andres, B. and Hamprecht, F. A. and Cardona, A. and Cook, M.},
      Journal
  • One plus one makes three (for social networks)
    E.-Á. Horvát, M. Hanselmann, F.A. Hamprecht, K.A. Zweig
    PLoS ONE, (2012) 4,7
    [10.1371/journal.pone.0034740]
    @Article{horvat_12_one,
      Title                    = {One plus one makes three (for social networks)},
      Author                   = {Horv\'at, E.-\'A. and Hanselmann, M. and Hamprecht, F.A. and Zweig, K.A.},
      Journal                  = {PLoS ONE},
    
  • Seeded watershed cut uncertainty estimators for guided interactive segmentation
    C. Straehle, U. Köthe, K. Briggman, W. Denk, F.A. Hamprecht
    in: CVPR 2012. Proceedings, (2012), 765 - 772
    [10.1109/CVPR.2012.6247747 | Technical Report]
    @InProceedings{straehle_12_seeded,
      Title                    = {Seeded watershed cut uncertainty estimators for guided interactive segmentation},
      Author                   = {Straehle, C. and K\"othe, U. and Briggman, K. and Denk, W. and Hamprecht, F.
  • Learning to Segment Dense Cell Nuclei with Shape Prior
    X. Lou, F. A. Hamprecht
    CVPR 2012. Proceedings, (2012), 1012-1018
    [10.1109/CVPR.2012.6247778 | Technical Report]
    @Article{lou_12_learning,
      Title                    = {Learning to Segment Dense Cell Nuclei with Shape Prior},
      Author                   = {Lou, X. and Hamprecht, F. A.},
      Journal                  = {CVPR 2012. Proceedings},
      Year
  • Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer
    C.M. Zechmann, B.H. Menze, B.M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Delorme, F.A. Hamprecht, P. Bachert
    Academic Radiology, (2012) 19, 6, 675-684
    [10.1016/j.acra.2012.02.014]
    @Article{zechmann_12_automated,
      Title                    = {Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer},
      Author                   = {Zechmann, C.M. and Menze, B.H. and Kelm, B.M. and Zamecnik, P. and
  • 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries
    B. Andres, U. Köthe, T. Kröger, M. Helmstaedter, K.L. Briggman, W. Denk, F. A. Hamprecht
    Medical Image Analysis, (2012) 16 (2012), 796-805
    [10.1016/j.media.2011.11.004 | Technical Report]
    @Article{andres_11_3d,
      Title                    = {3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries},
      Author                   = {Andres, B. and K\"othe, U. and Kr\"oger, T. and Helmstaedter, M. and Briggm
  • 2011

  • Image Processing for Super-Resolution Localization Microscopy Utilizing an FPGA Accelerator
    J. Schleicher , University of Heidelberg
    Master Thesis
    @MastersThesis{schleicher_11_image,
      Title                    = {Image Processing for Super-Resolution Localization Microscopy Utilizing an FPGA Accelerator},
      Author                   = {Schleicher, J.},
      School                   = {University of H
  • Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model
    B. Andres , University of Heidelberg
    PhD Thesis
    [Technical Report]
    @PhdThesis{andres_11_automated,
      Title                    = {Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model},
      Author                   = {Andres, B.},
      School                   = {University of Hei
  • Image-Based Supervision of a Periodically Working Machine
    M. Frank, F. A. Hamprecht
    Pattern Analysis and Applications, (2011), 1-10
    [10.1007/s10044-011-0245-7 | Technical Report]
    @Article{frank_11_image-based,
      Title                    = {Image-Based Supervision of a Periodically Working Machine},
      Author                   = {Frank, M. and Hamprecht, F. A.},
      Journal                  = {Pattern Analysis and Applications},
    
  • Structured Learning for Cell Tracking
    X. Lou, F. A. Hamprecht
    in: NIPS 2011. Proceedings, (2011), 1296-1304
    [Technical Report]
    @InProceedings{lou_11_structured,
      Title                    = {Structured Learning for Cell Tracking},
      Author                   = {Lou, X. and Hamprecht, F. A.},
      Booktitle                = {NIPS 2011. Proceedings},
      Year                     = {2
  • Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images
    A. Kreshuk, C. N. Straehle, C. Sommer, U. Köthe, M. Cantoni, G. Knott, F. A. Hamprecht
    PLoS ONE, (2011) 6 (10)
    [10.1371/journal.pone.0024899]
    @Article{kreshuk_11_automated2,
      Title                    = {Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images},
      Author                   = {Kreshuk, A. and Straehle, C. N. and Sommer, C.
  • Globally Optimal Image Partitioning by Multicuts
    J. H. Kappes, M. Speth, B. Andres, G. Reinelt, C. Schnörr
    in: EMMCVPR, Springer(2011), 31-44
    [10.1007/978-3-642-23094-3_3 | Technical Report]
    @InProceedings{kappes_11_globally,
      Title                    = {Globally Optimal Image Partitioning by Multicuts},
      Author                   = {Kappes, J. H. and Speth, M. and Andres, B. and Reinelt, G. and Schn\"orr, C.},
      Booktitle
  • A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface
    S. Wanner, C. Sommer, R. Rocholz, F. A. Hamprecht, B. Jähne
    in: 16th International Workshop on Vision, Modelling and Visualization, Eurographics Association, Germany(2011), 199-206
    [10.2312/PE/VMV/VMV11/199-206 | Technical Report]
    @InProceedings{wanner_11_framework,
      Title                    = {A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface},
      Author                   = {Wanner, S. and Sommer, C. and Rocholz, R. and Hamp
  • Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy
    M. Pfannmöller, H. Flügge, G. Benner, I. Wacker, C. Sommer, M. Hanselmann, S. Schmale, H. Schmidt, F. A. Hamprecht, T. Rabe, W. Kowalsky, R. Schröder
    Nano Letters, (2011) 11, 3099-3107
    [10.1021/nl201078t]
    @Article{pfannmoeller_11_visualizing,
      Title                    = {Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy},
      Author                   = {Pfannm\"oller, M. and Fl\"ugge, H. and Benne
  • Biomedical Data Analysis with Prior Knowledge: Modeling and Learning
    X. Lou , University of Heidelberg
    PhD Thesis
    @PhdThesis{lou_11_biomedical,
      Title                    = {Biomedical Data Analysis with Prior Knowledge: Modeling and Learning},
      Author                   = {Lou, X.},
      School                   = {University of Heidelberg},
      Year
  • Probabilistic Image Segmentation with Closedness Constraints
    B. Andres, J. H. Kappes, T. Beier, U. Köthe, F. A. Hamprecht
    in: ICCV, Proceedings, (2011), 2611 - 2618
    [10.1109/ICCV.2011.6126550 | Technical Report]
    @InProceedings{andres_11_probabilistic,
      Title                    = {Probabilistic Image Segmentation with Closedness Constraints},
      Author                   = {Andres, B. and Kappes, J. H. and Beier, T. and K\"othe, U. and Hamprecht, F. A.},
      Bookt
  • Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images
    C. N. Straehle, U. Köthe, G. Knott, F. A. Hamprecht
    in: MICCAI 2011, Proceedings., Springer(2011) 6891, 653-660
    [10.1007/978-3-642-23623-5_82 | Technical Report]
    @InProceedings{straehle_11_carving,
      Title                    = {Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images},
      Author                   = {Straehle, C. N. and K\"othe, U. and Knott, G. and Hamprecht, F. A.},
  • Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics
    F. Kaster , University of Heidelberg
    PhD Thesis
    @PhdThesis{kaster_11_image,
      Title                    = {Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics},
      Author                   = {Kaster, F.},
      School                   = {University of Heidelb
  • On oblique random forests
    B. Menze, B. H. Kelm, N. Splitthoff, U. Köthe, F. A. Hamprecht
    in: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., Springer(2011), 453-469
    [10.1007/978-3-642-23783-6_29 | Technical Report]
    @InProceedings{menze_11_on,
      Title                    = {On oblique random forests},
      Author                   = {Menze, B. and Kelm, B. H. and Splitthoff, N. and K\"othe, U. and Hamprecht, F. A.},
      Booktitle                = {European Conference on
  • Gaussian process classification: singly versus doubly stochastic models, and new computational schemes
    J. Röder, R. Tolosana-Delgado, F. A. Hamprecht
    Stochastic Environmental Research & Risk Assessment, (2011) 25 (7), 865-879
    [10.1007/s00477-011-0498-0 | Technical Report]
    @Article{roeder_11_gaussian,
      Title                    = {Gaussian process classification: singly versus doubly stochastic models, and new computational schemes},
      Author                   = {R\"oder, J. and Tolosana-Delgado, R. and Hamprecht, F. A.},
  • A Machine Learning Approach to Improve Digital Embryo Analysis
    M. Lindner , University of Heidelberg
    Master Thesis
    [Technical Report]
    @MastersThesis{lindner_11_machine,
      Title                    = {A Machine Learning Approach to Improve Digital Embryo Analysis},
      Author                   = {Lindner, M.},
      School                   = {University of Heidelberg},
      Year
  • Interactive Segmentation of Neural Electron Microscopy Data
    C. Straehle , University of Heidelberg
    Master Thesis
    @MastersThesis{straehle_11_interactive,
      Title                    = {Interactive Segmentation of Neural Electron Microscopy Data},
      Author                   = {Straehle, C.},
      School                   = {University of Heidelberg},
      Year
  • SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists
    M. Hanselmann, B. Voss, B. Y. Renard, M. Lindner, U. Köthe, M. Kirchner, F. A. Hamprecht
    Bioinformatics, (2011) 27 (7), 987-993
    [10.1093/bioinformatics/btr051 | Technical Report]
    @Article{hanselmann_11_sima,
      Title                    = {SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists},
      Author                   = {Hanselmann, M. and Voss, B. and Renard, B. Y. and Lindner, M. and K\"othe, U. and Kirchner, M. and Hampr
  • Automated Segmentation of Synapses in 3D EM Data
    A. Kreshuk, C. Strähle, C. Sommer, U. Köthe, G. Knott, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 220-223
    [10.1109/ISBI.2011.5872392 | Technical Report]
    @InProceedings{kreshuk_11_automated,
      Title                    = {Automated Segmentation of Synapses in 3D EM Data},
      Author                   = {Kreshuk, A. and Str\"ahle, C. and Sommer, C. and K\"othe, U. and Knott, G. and Hamprecht, F. A.},
      Book
  • DELTR: Digital Embryo Lineage Tree Reconstructor
    X. Lou, F. Kaster, M. Lindner, B. Kausler, U. Köthe, B. Höckendorf, J. Wittbrodt, H. Jänicke, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 1557-1560
    [10.1109/ISBI.2011.5872698 | Technical Report]
    @InProceedings{lou_11_deltr,
      Title                    = {DELTR: Digital Embryo Lineage Tree Reconstructor},
      Author                   = {Lou, X. and Kaster, F. and Lindner, M. and Kausler, B. and K\"othe, U. and H\"ockendorf, B. and Wittbrodt, J. and
  • ilastik: Interactive Learning and Segmentation Toolkit
    C. Sommer, C. Strähle, U. Köthe, F. A. Hamprecht
    in: Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, (2011), 230-233
    [10.1109/ISBI.2011.5872394 | Technical Report]
    @InProceedings{sommer_11_ilastik,
      Title                    = {ilastik: Interactive Learning and Segmentation Toolkit},
      Author                   = {Sommer, C. and Str\"ahle, C. and K\"othe, U. and Hamprecht, F. A.},
      Booktitle                = {Eig
  • An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
    F. O. Kaster, B. Merkel, O. Nix, F. A. Hamprecht
    Computer Science - Research and Development, (2011) 26, 65-85
    [10.1007/s00450-010-0143-z | Technical Report]
    @Article{kaster_11_object-oriented,
      Title                    = {An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements},
      Author                   = {Kaster, F. O.
  • Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations
    F. Kaster, B. H. Menze, M.-A. Weber, F. A. Hamprecht
    in: MICCAI 2010 Workshop MCV, Springer, Heidelberg(2011) LNCS 6533, 74-85
    [10.1007/978-3-642-18421-5_8 | Technical Report]
    @InProceedings{kaster_11_comparative,
      Title                    = {Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations},
      Author                   = {Kaster, F. and Menze, B. H. and Weber, M.-A. an
  • Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images
    B. M. Kelm, F. Kaster, A. Henning, M.-A. Weber, P. Bachert, P. Bösinger, F. A. Hamprecht, B. H. Menze
    NMR in Biomedicine, (2011) 25(1), 1-13
    [10.1002/nbm.1704 | Technical Report]
    @Article{kelm_11_using,
      Title                    = {Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images},
      Author                   = {Kelm, B. M. and Kaster, F. and Henning, A. and Weber, M.-A. and Bacher
  • 2010

  • Robust Methods for the Proteomic Data Analysis Pipeline
    B. Renard , University of Heidelberg
    PhD Thesis
    @PhdThesis{renard_10_robust,
      Title                    = {Robust Methods for the Proteomic Data Analysis Pipeline},
      Author                   = {Renard, B.},
      School                   = {University of Heidelberg},
      Year                     = {2010
  • Exploratory and computational analysis of huge volume images for connectomics
    T. Kröger , University of Heidelberg
    Master Thesis
    [Technical Report]
    @MastersThesis{kroeger_10_exploratory,
      Title                    = {Exploratory and computational analysis of huge volume images for connectomics},
      Author                   = {Kr\"oger, T.},
      School                   = {University of Heidelberg},
    
  • Multimodal Medical Image Analysis: from Visualization to Disease Modeling
    B. H. Menze, F. A. Hamprecht
    Zeitschrift für Med. Physik, (2010) 1, 1-2
    [10.1016/j.zemedi.2010.12.002]
    @Article{menze_11_multimodal,
      Title                    = {Multimodal Medical Image Analysis: from Visualization to Disease Modeling},
      Author                   = {Menze, B. H. and Hamprecht, F. A.},
      Journal                  = {Zeitschrift f\"ur Me
  • Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x
    B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @Article{andres_10_runtime,
      Title                    = {Runtime-Flexible Multi-dimensional Views and Arrays for {C++98} and {C++0x}},
      Author                   = {Andres, B. and K\"othe, U. and Kr\"oger, T. and Hamprecht, F. A.},
      Journal
  • How to Extract the Geometry and Topology from Very Large 3D Segmentations
    B. Andres, U. Köthe, T. Kröger, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @Article{andres_10_how,
      Title                    = {How to Extract the Geometry and Topology from Very Large 3D Segmentations},
      Author                   = {Andres, B. and K\"othe, U. and Kr\"oger, T. and Hamprecht, F. A.},
      Journal
  • Computational Methods for the Analysis of Mass Spectrometry Images
    M. Hanselmann , University of Heidelberg
    PhD Thesis
    [Technical Report]
    @PhdThesis{hanselmann_10_computational,
      Title                    = {Computational Methods for the Analysis of Mass Spectrometry Images},
      Author                   = {Hanselmann, M.},
      School                   = {University of Heidelberg},
      Year
  • The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search
    B. Andres, J. H. Kappes, U. Köthe, F. A. Hamprecht
    ArXiv e-prints, (2010)
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @Article{andres_10_lazy,
      Title                    = {The Lazy Flipper: {MAP} Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search},
      Author                   = {Andres, B. and Kappes, J. H. and K\"othe, U. and Hamprecht, F. A
  • Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon
    A. Kreshuk, M. Stankiewicz, X. Lou, M. Kirchner, F. A. Hamprecht, M. P. Mayer
    International Journal of Mass Spectrometry, (2010) 302, 125-131
    [10.1016/j.ijms.2010.08.025 | Technical Report]
    @Article{kreshuk_10_automated,
      Title                    = {Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon},
      Author                   = {Kreshuk, A. and Stankiewicz, M. and Lou, X
  • Geometric Analysis of 3D Electron Microscopy Data
    U. Köthe, B. Andres, T. Kröger, F. A. Hamprecht
    in: Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), (2010), 22-26
    [Technical Report]
    @InProceedings{koethe_10_geometric,
      Title                    = {Geometric Analysis of {3D} Electron Microscopy Data},
      Author                   = {K{\"o}the, U. and Andres, B. and Kr{\"o}ger, T. and Hamprecht, F. A.},
      Booktitle                = {P
  • An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM
    B. Andres, J. H. Kappes, U. Köthe, C. Schnörr, F. A. Hamprecht
    in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, (2010), 353-362
    [10.1007/978-3-642-15986-2_36 | Technical Report]
    @InProceedings{andres_10_empirical,
      Title                    = {An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM},
      Author                   = {Andres, B. and Kappes, J. H. and K\"othe, U. an
  • Interactive Learning for the Analysis of Biomedical and Industrial Imagery
    C. Sommer , University of Heidelberg
    PhD Thesis
    [Technical Report]
    @PhdThesis{sommer_10_interactive,
      Title                    = {Interactive Learning for the Analysis of Biomedical and Industrial Imagery},
      Author                   = {Sommer, C.},
      School                   = {University of Heidelberg},
      Year
  • Learning of Optimal Illumination for Material Classification
    M. Jehle, C. Sommer, B. Jähne
    in: Proceedings of the 32nd DAGM Symposium on Pattern Recognition, Darmstadt, Germany, Springer(2010), 563-572
    [10.1007/978-3-642-15986-2_57 | Technical Report]
    @InProceedings{jehle_10_learning,
      Title                    = {Learning of Optimal Illumination for Material Classification},
      Author                   = {Jehle, M. and Sommer, C. and J\"ahne, B.},
      Booktitle                = {Proceedings of the 32n
  • Automated Quality Control in the Life Sciences
    C. Scheelen , University of Heidelberg
    Master Thesis
    @MastersThesis{scheelen_10_automated,
      Title                    = {Automated Quality Control in the Life Sciences},
      Author                   = {Scheelen, C.},
      School                   = {University of Heidelberg},
      Year                     = {20
  • Estimating the Confidence of Peptide Identifications without Decoy Databases
    B. Y. Renard, W. Timm, M. Kirchner, J. A. J. Steen, F. A. Hamprecht, H. Steen
    Analytical Chemistry, (2010), 4314-4318
    [10.1021/ac902892j | Technical Report]
    @Article{renard_10_estimating,
      Title                    = {Estimating the Confidence of Peptide Identifications without Decoy Databases},
      Author                   = {Renard, B. Y. and Timm, W. and Kirchner, M. and Steen, J. A. J. and Hamprecht, F. A
  • Active and Online Learning for Interactive Image Analysis
    N. Hüsken , University of Heidelberg
    Master Thesis
    @MastersThesis{huesken_10_active,
      Title                    = {Active and Online Learning for Interactive Image Analysis},
      Author                   = {H\"usken, N.},
      School                   = {University of Heidelberg},
      Year
  • Modeling of Spectral Peaks for Mass-Spectrometry-based Proteomics
    B. Kausler , Universities of Karlsruhe and Heidelberg
    Master Thesis
    [Technical Report]
    @MastersThesis{kausler_10_modeling,
      Title                    = {Modeling of Spectral Peaks for Mass-Spectrometry-based Proteomics},
      Author                   = {Kausler, B.},
      School                   = {Universities of Karlsruhe and Heidelberg},
    
  • MGFp: An Open Mascot Generic Format Parser Library Implementation
    M. Kirchner, J. Steen, F. A. Hamprecht, H. Steen
    Journal of Proteome Research, (2010) 9 (5), 2762–2763
    [10.1021/pr100118f]
    @Article{kirchner_10_mgfp,
      Title                    = {MGFp: An Open Mascot Generic Format Parser Library Implementation},
      Author                   = {Kirchner, M. and Steen, J. and Hamprecht, F. A. and Steen, H.},
      Journal                  = {Jou
  • Using Protein Identification Data to Improve Mass Spectrometry Feature Extraction
    M. Riedl , University of Heidelberg
    Master Thesis
    @MastersThesis{riedl_10_using,
      Title                    = {Using Protein Identification Data to Improve Mass Spectrometry Feature Extraction},
      Author                   = {Riedl, M.},
      School                   = {University of Heidelberg},
      Year
  • Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments
    X. Lou, M. Kirchner, B. Y. Renard, U. Köthe, C. Graf, C. Lee, J. A. J. Steen, H. Steen, M. P. Mayer, F. A. Hamprecht
    Bioinformatics, (2010) 26(12), 1535-1541
    [10.1093/bioinformatics/btq165 | Technical Report]
    @Article{lou_10_deuteration,
      Title                    = {Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments},
      Author                   = {Lou, X. and Kirchner, M. and Renard, B. Y. and K\"othe, U. and Graf, C.
  • Construction and analysis of random tree ensembles
    R. Nair , University of Heidelberg
    Master Thesis
    @MastersThesis{nair_10_construction,
      Title                    = {Construction and analysis of random tree ensembles},
      Author                   = {Nair, R.},
      School                   = {University of Heidelberg},
      Year                     = {201
  • An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements
    F. O. Kaster, S. Kassemeyer, B. Merkel, O. Nix, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin 2010 - Algorithmen, Systeme, Anwendungen, Springer(2010), 97-101
    [Technical Report]
    @InProceedings{kaster_10_object-oriented,
      Title                    = {An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements},
      Author                   = {Kaster,
  • From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication
    K. Börner, J. Hermle, C. Sommer, N. P. Brown, B. Knapp, B. Glass, G. Torralba, J. Reymann, N. Beil, J. Beneke, R. Pepperkok, R. Schneider, T. Ludwig, M. Hausmann, F. A. Hamprecht, H. Erfle, L. Kaderali, H.-G. Kräusslich, M. J. Lehmann
    Biotechnology Journal, (2010) 5, 39-49
    [10.1002/biot.200900226 | Technical Report]
    @Article{boerner_10_from,
      Title                    = {From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication},
      Author                   = {B\"orner, K. and Hermle, J. and Sommer,
  • Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments
    M. Kirchner, B. Y. Renard, U. Köthe, D. J. Pappin, F. A. Hamprecht, J. A. J. Steen, H. Steen
    Bioinformatics, (2010) 26 (1), 77-83
    [10.1093/bioinformatics/btp607 | Technical Report]
    @Article{kirchner_10_computational,
      Title                    = {Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments},
      Author                   = {Kirchner, M. and Renard, B. Y. and K\"othe, U. and Pappin
  • 2009

  • Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times
    B. Andres, U. Köthe, A. Bonea, B. Nadler, F. A. Hamprecht
    in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 502-511
    [10.1007/978-3-642-03798-6 | Technical Report]
    @InProceedings{andres_09_quantitative,
      Title                    = {Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times},
      Author                   = {Andres, B. and K\"othe, U. and Bonea, A. and Nadler, B. and Hampre
  • Pixel Approximation Errors in Common Watershed Algorithms
    H. Meine, U. Köthe, P. Stelldinger
    in: Discrete Geometry for Computer Imagery, Springer(2009) 5810, 193-202
    [10.1007/978-3-642-04397-0 | Technical Report]
    @InProceedings{meine_09_pixel,
      Title                    = {Pixel Approximation Errors in Common Watershed Algorithms},
      Author                   = {Meine, H. and K\"othe, U. and Stelldinger, P.},
      Booktitle                = {Discrete Geometry for C
  • Fast and Accurate 3D Edge Detection for Surface Reconstruction
    C. Bähnisch, P. Stelldinger, U. Köthe
    in: Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, Springer(2009) 5748, 111-120
    [10.1007/978-3-642-03798-6 | Technical Report]
    @InProceedings{baehnisch_09_fast,
      Title                    = {Fast and Accurate 3D Edge Detection for Surface Reconstruction},
      Author                   = {B\"ahnisch, C. and Stelldinger, P. and K\"othe, U.},
      Booktitle                = {Pattern Re
  • Classification of Spectroscopic Images in the DIROlab Environment
    F.O. Kaster, B.M. Kelm, C.M. Zechmann, M.A. Weber, F.A. Hamprecht, O. Nix
    in: World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, Springer(2009) 25/V, 252--255
    [10.1007/978-3-642-03904-1_70]
    @InProceedings{kaster_09_classification,
      Title                    = {Classification of Spectroscopic Images in the DIROlab Environment},
      Author                   = {F.O. Kaster and B.M. Kelm and C.M. Zechmann and M.A. Weber and F.A. Hamprecht and O.
  • A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy
    C. Thieke, O. Nix, A. Koehn, R. Floca, D. van Straaten, H. Hahn, L. G. Strauss, U. Siems, M. Graf, H. Pruem, J. Klein, H. Laue, F. Kaster, F. A. Hamprecht, D. Simon, B. Stieltjes, J. Debus, P. E. Huber
    Strahlentherapie und Onkologie, (2009) 185, 81
    @Article{thieke_09_framework,
      Title                    = {A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy},
      Author                   = {Thieke, C. and Nix, O. and Koehn, A. and Floca, R. and
  • Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition
    N. Ozlu, F. Monigatti, B. Y. Renard, C. M. Field, H. Steen, T. J. Mitchison, J. J. Steen
    Molecular & Cellular Proteomics, (2009)
    [10.1074/mcp.M900308-MCP200]
    @Article{ozlu_09_binding,
      Title                    = {Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition},
      Author                   = {Ozlu, N. and Monigatti, F. and Renard, B. Y. and Field, C. M. and Ste
  • When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing
    B. Y. Renard, M. Kirchner, F. Monigatti, A. R. Ivanov, J. Rappsilber, D. Winter, J. A. Steen, F. A. Hamprecht, H. Steen
    Proteomics, (2009) 9, 4978-4984
    [10.1002/pmic.200900326 | Technical Report]
    @Article{renard_09_when,
      Title                    = {When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing},
      Author                   = {Renard, B. Y. and Kirchner, M. and Monigatti, F. and
  • A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data
    B. H. Menze, B. M. Kelm, R. Masuch, U. Himmelreich, P. Bachert, W. Petrich, F. A. Hamprecht
    BMC Bioinformatics, (2009) 10:213
    [10.1186/1471-2105-10-213 | Technical Report]
    @Article{menze_09_comparison,
      Title                    = {A Comparison of Random Forest and its {Gini} Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data},
      Author                   = {Menze, B.
  • Multivariate Watershed Segmentation of Compositional Data
    M. Hanselmann, U. Köthe, B. Y. Renard, M. Kirchner, R. M. A. Heeren, F. A. Hamprecht
    in: Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, Springer(2009) 5810, 180-192
    [10.1007/978-3-642-04397-0 | Technical Report]
    @InProceedings{hanselmann_09_multivariate,
      Title                    = {Multivariate Watershed Segmentation of Compositional Data},
      Author                   = {Hanselmann, M. and K\"othe, U. and Renard, B. Y. and Kirchner, M. and Heeren, R. M. A. and
  • Towards Digital Staining using Imaging Mass Spectrometry and Random Forests
    M. Hanselmann, U. Köthe, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
    Journal of Proteome Research, (2009) 8, 3558-3567
    [10.1021/pr900253y | Technical Report]
    @Article{hanselmann_09_towards,
      Title                    = {Towards Digital Staining using Imaging Mass Spectrometry and Random Forests},
      Author                   = {Hanselmann, M. and K\"othe, U. and Kirchner, M. and Renard, B. Y. and Amstalden, E.
  • Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures
    M. Frank, M. Plaue, F. A. Hamprecht
    Optical Engineering, (2009) 48, 077003
    [10.1117/1.3159869 | Technical Report]
    @Article{frank_09_denoising,
      Title                    = {Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures},
      Author                   = {Frank, M. and Plaue, M. and Hamprecht, F. A.},
      Journal                  = {O
  • Analysis of Single-Molecule Fluorescence Spectroscopic Data with a Markov Modulated Poisson Process
    M. Jäger, A. Kiel, D.-P. Herten, F. A. Hamprecht
    ChemPhysChem, (2009) 10:14, 2486-2495
    [10.1002/cphc.200900331]
    @Article{jaeger_09_analysis,
      Title                    = {Analysis of Single-Molecule Fluorescence Spectroscopic Data with a {Markov Modulated Poisson Process}},
      Author                   = {J\"ager, M. and Kiel, A. and Herten, D.-P. and Hamprecht, F.
  • Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model
    M. Hayn, S. Beirle, F. A. Hamprecht, U. Platt, B. H. Menze, T. Wagner
    Atmospheric Chemistry and Physics, (2009) 9, 9367-9398
    [10.5194/acp-9-6459-2009 | Technical Report]
    @Article{hayn_09_analysing,
      Title                    = {Analysing spatio-temporal patterns of the global NO2-distribution retrieved frome GOME satellite observations using a generalized additive model},
      Author                   = {Hayn, M
  • Processing Spectral Data
    L. Görlitz, B. H. Menze, B. M. Kelm, F. A. Hamprecht
    Surface and Interface Analysis, (2009) 41, 636-644
    [10.1002/sia.3066 | Technical Report]
    @Article{goerlitz_09_processing,
      Title                    = {Processing Spectral Data},
      Author                   = {G\"orlitz, L. and Menze, B. H. and Kelm, B. M. and Hamprecht, F. A.},
      Journal                  = {Surface and Interface Analysis},
  • Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge
    B. M. Kelm, B. H. Menze, O. Nix, C. Zechmann, F. A. Hamprecht
    IEEE Transaction on Medical Imaging, (2009) 28:10, 1534-1547
    [10.1109/TMI.2009.2019957 | Technical Report]
    @Article{kelm_09_estimating,
      Title                    = {Estimating Kinetic Parameter Maps from {Dynamic Contrast-Enhanced MRI} using Spatial Prior Knowledge},
      Author                   = {Kelm, B. M. and Menze, B. H. and Nix, O. and Zechmann, C. and
  • Quantification of Tumour Angiogenesis Using Pattern Recognition
    S. Kassemeyer , University of Heidelberg
    Master Thesis
    @MastersThesis{kassemeyer_09_quantification,
      Title                    = {Quantification of Tumour Angiogenesis Using Pattern Recognition},
      Author                   = {Kassemeyer, S.},
      School                   = {University of Heidelberg},
      Year
  • Semi-automatic analysis of high-information-content neurobiological image data
    J. Greis , University of Heidelberg
    Master Thesis
    @MastersThesis{greis_09_semi-automatic,
      Title                    = {Semi-automatic analysis of high-information-content neurobiological image data},
      Author                   = {Greis, J.},
      School                   = {University of Heidelberg},
    
  • Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation
    S. Trittler, F. A. Hamprecht
    Digital Signal Processing, (2009) 19, 628-639
    [10.1016/j.dsp.2008.10.003 | Technical Report]
    @Article{trittler_09_near-optimum,
      Title                    = {Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation},
      Author                   = {Trittler, S. and Hamprecht, F. A.},
      Journal
  • Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras
    M. Frank, M. Plaue, H. Rapp, U. Köthe, B. Jähne, F. A. Hamprecht
    Optical Engineering, (2009) 48, 013602
    [10.1117/1.3070634 | Technical Report]
    @Article{frank_09_theoretical,
      Title                    = {Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras},
      Author                   = {Frank, M. and Plaue, M. and Rapp, H. and K\"othe, U. and J\"ahne, B.
  • Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen
    M. Staudacher, F. A. Hamprecht, L. Görlitz
    Patent, Patent Number: WO2009/062781 A1
    @Misc{staudacher_09_selbstadaptivitaet,
      Title                    = {Self Adjustment of Scanning Electron Microscopes / {Selbstadaptivit\"at von Rasterelektronenmikroskopen}},
    
      Author                   = {Staudacher, M. and Hamprecht, F. A. and G\"o
  • 2008

  • A Topological Sampling Theorem for Robust Boundary Reconstruction and Image Segmentation
    H. Meine, U. Köthe, P. Stelldinger
    Discrete Applied Mathematics, (2008) 157, 524-541
    [10.1016/j.dam.2008.05.031]
    @Article{meine_08_topological,
      Title                    = {A Topological Sampling Theorem for Robust Boundary Reconstruction and Image Segmentation},
      Author                   = {Meine, H. and K\"othe, U. and Stelldinger, P.},
      Journal
  • What Can We Learn from Discrete Images about the Continuous World
    U. Köthe
    in: Discrete Geometry for Computer Imagery, Springer(2008) 4992, 4-19
    [10.1007/978-3-540-79126-3_2]
    @InCollection{koethe_08_what,
      Title                    = {What Can We Learn from Discrete Images about the Continuous World},
      Author                   = {K\"othe, U.},
      Booktitle                = {Discrete Geometry for Computer Imagery},
      Publis
  • Method for processing an intensity image of a microscope
    M. Staudacher, F. A. Hamprecht, L. Görlitz
    Patent, Patent Number: WO2008/034721-A1;
    @Misc{staudacher_08_method,
      Title                    = {Method for processing an intensity image of a microscope},
    
      Author                   = {Staudacher, M. and Hamprecht, F. A. and G\"orlitz, L.},
      HowPublished             = {Patent, Patent Nu
  • Alignment and Retention Time Correction of LC-MS Data in Proteomics
    B. Voss , University of Heidelberg
    Master Thesis
    @MastersThesis{voss_08_alignment,
      Title                    = {Alignment and Retention Time Correction of LC-MS Data in Proteomics},
      Author                   = {Voss, B.},
      School                   = {University of Heidelberg},
      Year
  • Oject Detection with Generic Features: An Application to STED Microscopy
    M. Griessinger , University of Heidelberg
    Master Thesis
    @MastersThesis{griessinger_08_object,
      Title                    = {Oject Detection with Generic Features: An Application to STED Microscopy},
      Author                   = {Griessinger, M.},
      School                   = {University of Heidelberg},
      Y
  • Pattern Recognition on Statistically Textured Surfaces
    P. Sauer , University of Heidelberg
    Master Thesis
    @MastersThesis{sauer_08_pattern,
      Title                    = {Pattern Recognition on Statistically Textured Surfaces},
      Author                   = {Sauer, P.},
      School                   = {University of Heidelberg},
      Year                     = {20
  • Concise Representation of MS Images by Probabilistic Latent Semantic Analysis
    M. Hanselmann, M. Kirchner, B. Y. Renard, E. R. Amstalden, K. Glunde, R. M. A. Heeren, F. A. Hamprecht
    Analytical Chemistry, (2008) 80, 9649-9658
    [10.1021/ac801303x | Technical Report]
    @Article{hanselmann_08_concise,
      Title                    = {Concise Representation of MS Images by Probabilistic Latent Semantic Analysis},
      Author                   = {Hanselmann, M. and Kirchner, M. and Renard, B. Y. and Amstalden, E. R. and Glunde
  • A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras
    H. Rapp, M. Frank, F. A. Hamprecht, B. Jähne
    Int. J. Intelligent Systems Technologies and Applications, (2008) 5, 402-413
    [10.1504/IJISTA.2008.021303 | Technical Report]
    @Article{rapp_08_theoretical,
      Title                    = {A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras},
      Author                   = {Rapp, H. and Frank, M. and Hamprech
  • Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes
    M. Jäger, F. A. Hamprecht
    IEEE Transactions on Industrial Electronics, (2008) 56:4, 1307-1313
    [10.1109/TIE.2008.2008339]
    @Article{jaeger_08_principal,
      Title                    = {Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes},
      Author                   = {J\"ager, M. and Hamprecht, F. A.},
      Journal                  = {IEEE
  • NITPICK: Peak Identification for Mass Spectrometry Data
    B. Y. Renard, M. Kirchner, H. Steen, J. A J. Steen, F. A. Hamprecht
    BMC Bioinformatics, (2008) 9, 355
    [10.1186/1471-2105-9-355]
    @Article{renard_08_nitpick,
      Title                    = {NITPICK: Peak Identification for Mass Spectrometry Data},
      Author                   = {Renard, B. Y. and Kirchner, M. and Steen, H. and Steen, J. A J. and Hamprecht, F. A.},
      Journal
  • Peak Identification for Liquid Chromatography and Mass Spectrometry
    S. Boppel , University of Heidelberg
    Master Thesis
    @MastersThesis{boppel_08_peak,
      Title                    = {Peak Identification for Liquid Chromatography and Mass Spectrometry},
      Author                   = {Boppel, S.},
      School                   = {University of Heidelberg},
      Year
  • Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics
    T. König, B. H. Menze, M. Kirchner, F. Monigatti, K. C. Parker, T. Patterson, J. Jebanthirajah Steen, F. A. Hamprecht, H. Steen
    Journal of Proteome Research, (2008) 7, 3708-3717
    [10.1021/pr700859x | Technical Report]
    @Article{koenig_08_robust,
      Title                    = {Robust Prediction of the {MASCOT} Score for an Improved Quality Assessment in Mass Spectrometric Proteomics},
      Author                   = {K\"onig, T. and Menze, B. H. and Kirchner, M. and Moniga
  • On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation
    B. Andres, C. Kondermann, D. Kondermann, U. Köthe, F. A. Hamprecht, C. S. Garbe
    Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on, (2008), 1-6
    [10.1109/CVPR.2008.4587571 | Technical Report]
    @Article{andres_08_errors-in-variables,
      Title                    = {On errors-in-variables regression with arbitrary covariance and its application to optical flow estimation},
      Author                   = {Andres, B. and Kondermann, C. and Kondermann
  • Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification
    B. Andres, U. Köthe, M. Helmstaedter, W. Denk, F. A. Hamprecht
    in: Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, Springer(2008) 5096, 142-152
    [10.1007/978-3-540-69321-5_15 | Technical Report]
    @InProceedings{andres_08_segmentation,
      Title                    = {Segmentation of {SBFSEM} Volume Data of Neural Tissue by Hierarchical Classification},
      Author                   = {Andres, B. and K\"othe, U. and Helmstaedter, M. and Denk, W. and Ha
  • Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis
    J. Steen, H. Steen, A. Georgi, K. Parker, M. Springer, M. Kirchner, F. A. Hamprecht, M. W. Kirschner
    Proceedings of the National Academy of Sciences, (2008) 105, 6069-6074
    [10.1073/pnas.0709807104 | Technical Report]
    @Article{steen_08_different,
      Title                    = {Different Phosphorylation States of the Anaphase Promoting Complex in Response to Anti-Mitotic Drugs: A Quantitative Proteomic Analysis},
      Author                   = {Steen, J. and Steen, H. an
  • Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes
    M. Jäger, S. Humbert, F. A. Hamprecht
    IEEE Transactions on Industrial Electronics, (2008) 55, 2177-2184
    [10.1109/TIE.2008.918637]
    @Article{jaeger_08_sputter,
      Title                    = {Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes},
      Author                   = {J\"ager, M. and Humbert, S. and Hamprecht, F. A.},
      Journal
  • Weakly Supervised Learning of a Classifier for Unusual Event Detection
    M. Jäger, C. Knoll, F. A. Hamprecht
    IEEE Transactions on Image Processing, (2008) 17, 1700-1708
    [10.1109/TIP.2008.2001043 | Technical Report]
    @Article{jaeger_08_weakly,
      Title                    = {Weakly Supervised Learning of a Classifier for Unusual Event Detection},
      Author                   = {J\"ager, M. and Knoll, C. and Hamprecht, F. A.},
      Journal                  = {IEEE Transact
  • Mimicking the human expert: pattern recognition for an automated assessment of data quality in MRSI
    B. H. Menze, B. M. Kelm, M. Weber, P. Bachert, F. A. Hamprecht
    Magnetic Resonance in Medicine, (2008) 59, 1457-1466
    [10.1002/mrm.21519 | Technical Report]
    @Article{menze_08_mimicking,
      Title                    = {Mimicking the human expert: pattern recognition for an automated assessment of data quality in {MRSI}},
      Author                   = {Menze, B. H. and Kelm, B. M. and Weber, M. and Bachert, P. a
  • Nonlinear Analysis of Multi-Dimensional Signals
    C. S. Garbe, K. Krajsek, P. Pavlov, B. Andres, M. Mühlich, I. Stuke, C. Mota, M. Böhme, M. Haker, T. Schuchert, H. Scharr, T. Aach, E. Barth, R. Mester, B. Jähne
    in: Mathematical Methods in Signal Processing and Digital Image Analysis, Springer(2008), 231-288
    [10.1007/978-3-540-75632-3_7 | Technical Report]
    @InCollection{garbe_08_nonlinear,
      Title                    = {Nonlinear Analysis of Multi-Dimensional Signals},
      Author                   = {Garbe, C. S. and Krajsek, K. and Pavlov, P. and Andres, B. and M\"uhlich, M. and Stuke, I. and Mota, C. and B
  • Analysis of Spectral Data
    M. Kirchner , University of Heidelberg
    PhD Thesis
    @PhdThesis{kirchner_08_analysis,
      Title                    = {Analysis of Spectral Data},
      Author                   = {Kirchner, M.},
      School                   = {University of Heidelberg},
      Year                     = {2008},
    
      Access
  • 2007

  • Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer
    C. Weber, C. M. Zechmann, B. M. Kelm, R. Zamecnik, D. Hendricks, R. Waldherr, F. A. Hamprecht, S. Delorme, P. Bachert, U. Ikinger
    Der Urologe, (2007) 46, 1252
    [10.1007/s00120-007-1488-1]
    @Article{weber_07_comparison,
      Title                    = {Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer},
      Author                   = {Weber, C. and Zechmann, C. M. and Kelm, B. M. and Zamecnik, R.
  • Pattern Recognition, 29th DAGM Symposium, Heidelberg, Germany, September 12-14, 2007, Proceedings
    [10.1007/978-3-540-74936-3]
    @Book{hamprecht_07_pattern,
      Title                    = {Pattern Recognition, 29th DAGM Symposium, Heidelberg, Germany, September 12-14, 2007, Proceedings},
      Editor                   = {Hamprecht, F. A. and J\"ahne, B. and Schn\"orr, C.},
      Publisher
  • Schnelle 3D-Vermessung von Partikeln in Rasterelektronenmiskroskopen mit Hilfe eines Rücksteuerdetektors
    L. Görlitz, M. Singh, P. Schützbach
    Invention Disclosure
    @Misc{goerlitz_07_schnelle,
      Title                    = {{Schnelle 3D-Vermessung von Partikeln in Rasterelektronenmiskroskopen mit Hilfe eines R\"ucksteuerdetektors}},
    
      Author                   = {G\"orlitz, L. and Singh, M. and Sch\"utzbach, P.},
    
  • Pattern Recognition in the Quantitative Analysis of Vector-Valued Image Data: Diagnostic Systems and Applications
    B. Menze , University of Heidelberg
    PhD Thesis
    @PhdThesis{menze_07_mustererkennung,
      Title                    = {Pattern Recognition in the Quantitative Analysis of Vector-Valued Image Data: Diagnostic Systems and Applications},
      Author                   = {Menze, B.},
      School
  • Modern Concepts for Semi-Supervised Learning and Multidimensional Image Processing
    L. Görlitz , University of Heidelberg
    PhD Thesis
    @PhdThesis{goerlitz_07_modern,
      Title                    = {Modern Concepts for Semi-Supervised Learning and Multidimensional Image Processing},
      Author                   = {G\"orlitz, L.},
      School                   = {University of Heidelberg},
    
  • Selection of Local Optical Flow Models by Means of Residual Analysis
    B. Andres, F. A. Hamprecht, C. S. Garbe
    in: Pattern Recognition, Springer(2007) 4713, 72-81
    [10.1007/978-3-540-74936-3_8 | Technical Report]
    @InProceedings{andres_07_selection,
      Title                    = {Selection of Local Optical Flow Models by Means of Residual Analysis},
      Author                   = {Andres, B. and Hamprecht, F. A. and Garbe, C. S.},
      Booktitle                = {Patt
  • Semi-Supervised Tumor Detection in MRSI With Discriminative Random Fields
    L. Görlitz, B. H. Menze, M.-A. Weber, B. M. Kelm, F. A. Hamprecht
    in: Pattern Recognition, Springer(2007) 4713, 224-233
    [10.1007/978-3-540-74936-3_23 | Technical Report]
    @InProceedings{goerlitz_07_semi,
      Title                    = {Semi-Supervised Tumor Detection in {MRSI} With Discriminative Random Fields},
      Author                   = {G\"orlitz, L. and Menze, B. H. and Weber, M.-A. and Kelm, B. M. and Hamprecht, F.
  • Investigation of a 3D Camera
    M. Frank , University of Heidelberg
    Master Thesis
    @MastersThesis{frank_07_investigation,
      Title                    = {Investigation of a {3D} Camera},
      Author                   = {Frank, M.},
      School                   = {University of Heidelberg},
      Year                     = {2007},
    
      Access
  • Processing of Interferometric Data
    S. Trittler , University of Heidelberg
    PhD Thesis
    @PhdThesis{trittler_07_processing,
      Title                    = {Processing of Interferometric Data},
      Author                   = {Trittler, S.},
      School                   = {University of Heidelberg},
      Year                     = {2007},
    
      Acces
  • Retention Time Domain Registration of Liquid Chromatography/Mass Spectrometry Data
    B. Saussen , University of Heidelberg
    Master Thesis
    @MastersThesis{saussen_07_retention,
      Title                    = {Retention Time Domain Registration of Liquid Chromatography/Mass Spectrometry Data},
      Author                   = {Saussen, B.},
      School                   = {University of Heidelberg},
  • Quality Control in Mass Spectrometry
    T. König , University of Heidelberg
    Master Thesis
    [Technical Report]
    @MastersThesis{koenig_07_quality,
      Title                    = {Quality Control in Mass Spectrometry},
      Author                   = {K\"onig, T.},
      School                   = {University of Heidelberg},
      Year                     = {2007},
      Note
  • Classification of multispectral ASTER imagery in the archaeological survey for settlement sites of the Near East
    B. H. Menze, J. A. Ur
    in: Proc 10th International Symposium on Physical Measurements and Signature in Remote Sensing (ISPMRS 07), Davos, Switzerland, International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences(2007)
    [Technical Report]
    @InProceedings{menze_07_classification,
      Title                    = {Classification of multispectral {ASTER} imagery in the archaeological survey for settlement sites of the Near East},
      Author                   = {Menze, B. H. and Ur, J. A.},
      Book
  • An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data
    B. Y. Renard , University of Heidelberg
    Master Thesis
    @MastersThesis{renard_07_improved,
      Title                    = {An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data},
      Author                   = {Renard, B. Y.},
      School                   = {University of Heidelberg},
    
  • Statistical analysis of spatio-temporal patterns in global NOX satellite data
    M. Hayn , University of Heidelberg
    Master Thesis
    @MastersThesis{hayn_07_statistical,
      Title                    = {Statistical analysis of spatio-temporal patterns in global {NOX} satellite data},
      Author                   = {Hayn, M.},
      School                   = {University of Heidelberg},
      Yea
  • Evaluation of Vector-Valued Clinical Image Data Using Probabilistic Graphical Models: Quantification and Pattern Recognition
    B. M. Kelm , University of Heidelberg
    PhD Thesis
    @PhdThesis{kelm_07_evaluation,
      Title                    = {Evaluation of Vector-Valued Clinical Image Data Using Probabilistic Graphical Models: Quantification and Pattern Recognition},
      Author                   = {Kelm, B. M.},
      School
  • Time Series Analysis and Classification with State-Space Models for Industrial Processes and the Life Sciences
    M. Jäger , University of Heidelberg
    PhD Thesis
    [Technical Report]
    @PhdThesis{jaeger_07_time,
      Title                    = {Time Series Analysis and Classification with State-Space Models for Industrial Processes and the Life Sciences},
      Author                   = {J{\"a}ger, M.},
      School                   = {Univer
  • Model Selection in Optical Flow-Based Motion Estimation by Means of Residual Analysis
    B. Andres , University of Heidelberg
    Master Thesis
    [Technical Report]
    @MastersThesis{andres_07_model,
      Title                    = {Model Selection in Optical Flow-Based Motion Estimation by Means of Residual Analysis},
      Author                   = {Andres, B.},
      School                   = {University of Heidelberg},
    
  • Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification
    B. M. Kelm, B. H. Menze, C. M. Zechmann, K. T. Baudendistel, F. A. Hamprecht
    Magnetic Resonance in Medicine, (2007) 57, 150-159
    [10.1002/mrm.21112 | Technical Report]
    @Article{kelm_07_automated,
      Title                    = {Automated Estimation of Tumor Probability in Prostate MRSI: Pattern Recognition vs. Quantification},
      Author                   = {Kelm, B. M. and Menze, B. H. and Zechmann, C. M. and Baudendiste
  • Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy
    B. H. Menze, W. Petrich, F. A. Hamprecht
    Analytical and Bioanalytical Chemistry, (2007) 387, 1801-1807
    [10.1007/s00216-006-1070-5 | Technical Report]
    @Article{menze_07_multivariate,
      Title                    = {Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy},
      Author                   = {Menze, B. H
  • amsrpm: Robust Point Matching in Retention Time Alignment of LC/MS Data with R
    M. Kirchner, B. Saussen, H. Steen, J. A. J. Steen, F. A. Hamprecht
    Journal of Statistical Software, (2007) 18, 1-12
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL]
    @Article{kirchner_07_amsrpm,
      Title                    = {amsrpm: Robust Point Matching in Retention Time Alignment of {LC/MS} Data with {R}},
      Author                   = {Kirchner, M. and Saussen, B. and Steen, H. and Steen, J. A. J. and Hamprecht, F
  • Virtual Survey on North Mesopotamian Tell Sites by Means of Satellite Remote Sensing
    B. H. Menze, S. Muehl, A. G. Sherratt
    in: Broadening Horizons: Multidisciplinary Approaches to Landscape Study, Cambridge Scholars Publishing(2007), 5-29
    [Technical Report]
    @InProceedings{menze_07_virtual,
      Title                    = {Virtual Survey on {North Mesopotamian} Tell Sites by Means of Satellite Remote Sensing},
      Author                   = {Menze, B. H. and Muehl, S. and Sherratt, A. G.},
      Booktitle
  • From eigenspots to fisherspots - latent spaces in the nonlinear detection of spot patterns in a highly variable background
    B. H. Menze, B. M. Kelm, F. A. Hamprecht
    in: Advances in data analysis, Springer(2007) 33, 255-262
    [10.1007/978-3-540-70981-7_29 | Technical Report]
    @InProceedings{menze_07_from,
      Title                    = {From eigenspots to fisherspots -- latent spaces in the nonlinear detection of spot patterns in a highly variable background},
      Author                   = {Menze, B. H. and Kelm, B. M. and Hamp
  • Generalizing the Abbott-Firestone curve by two new surface descriptors
    J. Schmähling, F. A. Hamprecht
    Wear, (2007) 262, 1360-1371
    [10.1016/j.wear.2007.01.025 | Technical Report]
    @Article{schmaehling_07_generalizing,
      Title                    = {Generalizing the {Abbott-Firestone} curve by two new surface descriptors},
      Author                   = {Schm\"ahling, J. and Hamprecht, F. A.},
      Journal                  = {Wear},
    
  • 2006

  • Statistical characterization of technical surface microstructure
    J. Schmähling , University of Heidelberg
    PhD Thesis
    [Technical Report]
    @PhdThesis{schmaehling_06_statistical,
      Title                    = {Statistical characterization of technical surface microstructure},
      Author                   = {Schm\"ahling, J.},
      School                   = {University of Heidelberg},
      Year
  • Zuordnung von Partikeln zu Entstehungsprozessen
    L. Görlitz, F. A. Hamprecht, M. Staudacher
    Invention Disclosure
    @Misc{goerlitz_06_zuordnung,
      Title                    = {{Zuordnung von Partikeln zu Entstehungsprozessen}},
    
      Author                   = {G\"orlitz, L. and Hamprecht, F. A. and Staudacher, M.},
      HowPublished             = {Invention Disclosure},
    
  • Data Mining auf multidimensionalen und komplexen Daten in der industriellen Bildverarbeitung
    S. Hader , University of Heidelberg
    PhD Thesis
    @PhdThesis{hader_06_data,
      Title                    = {{Data Mining auf multidimensionalen und komplexen Daten in der industriellen Bildverarbeitung}},
      Author                   = {Hader, S.},
      School                   = {University of Heidelberg},
    
  • Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images
    B. H. Menze, B. M. Kelm, D. Heck, M. P. Lichy, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin, (2006), 31-36
    [10.1007/3-540-32137-3_7]
    @InProceedings{menze_06_machine-based,
      Title                    = {Machine-based rejection of low quality spectra and estimation of brain tumor probabilities from magnetic resonance spectroscopic images},
      Author                   = {Menze, B. H. and
  • Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients
    C. Zechmann, B. M. Kelm, P. Zamecnik, U. Ikinger, R. Waldherr, S. Röll, S. Delorme, F. A. Hamprecht, P. Bachert
    in: Proceedings of the 16th ISMRM, (2006)
    @InProceedings{zechmann_06_can,
      Title                    = {Can man still beat the machine? {A}utomated vs. manual pattern recognition of {3D MRSI} data of prostate cancer patients},
      Author                   = {Zechmann, C. and Kelm, B. M. and Zamec
  • Discontinuity Preserving Filtering of Spectral Images
    K. Lerch , University of Heidelberg
    Master Thesis
    @MastersThesis{lerch_06_discontinuity,
      Title                    = {Discontinuity Preserving Filtering of Spectral Images},
      Author                   = {Lerch, K.},
      School                   = {University of Heidelberg},
      Year
  • Single tone frequency estimation from very few sampling points
    M. Wieler , University of Heidelberg
    Master Thesis
    @MastersThesis{wieler_06_single,
      Title                    = {Single tone frequency estimation from very few sampling points},
      Author                   = {Wieler, M.},
      School                   = {University of Heidelberg},
      Year
  • Color image processing
    M. F. Carlsohn, B. H. Menze, B. M. Kelm, F. A. Hamprecht, A. Kercek, R. Leitner, G. Polder
    @InBook{carlsohn_06_spectral,
      Title                    = {Color image processing},
      Author                   = {Carlsohn, M. F. and Menze, B. H. and Kelm, B. M. and Hamprecht, F. A. and Kercek, A. and Leitner, R. and Polder, G.},
      Chapter
  • CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.
    B. M. Kelm, B. H. Menze, T. Neff, C. M. Zechmann, F. A. Hamprecht
    in: Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, Springer(2006), 51-55
    [10.1007/3-540-32137-3_7 | Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL | Technical Report]
    @InProceedings{kelm_06_claret,
      Title                    = {{CLARET}: a tool for fully automated evaluation of {MRSI} with pattern recognition methods.},
      Author                   = {Kelm, B. M. and Menze, B. H. and Neff, T. and Zechmann, C. M. and Ha
  • Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM
    B. M. Kelm, N. Müller, B. H. Menze, F. A. Hamprecht
    in: Proc Computer Vision and Pattern Recognition Workshop (Mathematical Methods in Biomedical Image Analysis), IEEE Computer Society(2006), 96-103
    [10.1109/CVPRW.2006.41 | Technical Report]
    @InProceedings{kelm_06_bayesian,
      Title                    = {Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced {MR} Images with Block-{ICM}},
      Author                   = {Kelm, B. M. and M\"uller, N. and Menze, B. H. and Hamp
  • Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning.
    B. M. Kelm, C. Pal, A. McCallum
    in: ICPR 2006, (2006) 2, 828-832
    [10.1109/ICPR.2006.384 | Technical Report]
    @InProceedings{kelm_06_combining,
      Title                    = {Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning.},
      Author                   = {Kelm, B. M. and Pal, C. and McCallum, A.},
      Bookt
  • Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren
    M. P. Lichy, P. Bachert, F. A. Hamprecht, M.-A. Weber, J. Debus, D. Schulz-Ertner, H.-U. Kauczor, H.-P. Schlemmer
    Zeitung für Röntgenforschung, (2006) 178, 627-633
    [10.1055/s-2006-926744]
    @Article{lichy_06_einsatz,
      Title                    = {{Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker f\"ur die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirnt
  • Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor
    B. H. Menze, M. P. Lichy, P. Bachert, B. M. Kelm, H. P. Schlemmer, F. A. Hamprecht
    NMR in Biomedicine, (2006) 19, 599-609
    [10.1002/nbm.1041 | Technical Report]
    @Article{menze_06_optimal,
      Title                    = {Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor},
      Author                   = {Menze, B. H. and Lichy, M. P. and Bachert, P.
  • Detection of ancient settlement mounds - Archaeological survey based on the SRTM terrain model
    B. H. Menze, J. A. Ur, A. G. Sherratt
    Photgrammetric Engineering & Remote Sensing, (2006) 3, 321-327
    [Technical Report]
    @Article{menze_06_detection,
      Title                    = {Detection of ancient settlement mounds - Archaeological survey based on the {SRTM} terrain model},
      Author                   = {Menze, B. H. and Ur, J. A. and Sherratt, A. G.},
      Journal
  • A three-dimensional measure of surface roughness based on mathematical morphology
    J. Schmähling, F. A. Hamprecht, D. M. P. Hoffmann
    International Journal of Machine Tools and Manufacture, (2006) 46 (14), 1764-1769
    [10.1016/j.ijmachtools.2005.12.003 | Technical Report]
    @Article{schmaehling_06_threedimensional,
      Title                    = {A three-dimensional measure of surface roughness based on mathematical morphology},
      Author                   = {Schm\"ahling, J. and Hamprecht, F. A. and Hoffmann, D. M. P.},
      J
  • A QCAR-approach to materials modelling
    S. Sieg, B. Stutz, T. Schmidt, F. A. Hamprecht, W. F. Maier
    Journal of Molecular Modeling, (2006) 12, 611-619
    [10.1007/s00894-005-0068-9 | Technical Report]
    @Article{sieg_06_qcar,
      Title                    = {A {QCAR}-approach to materials modelling},
      Author                   = {Sieg, S. and Stutz, B. and Schmidt, T. and Hamprecht, F. A. and Maier, W. F.},
      Journal                  = {Journal of Molecu
  • 2005

  • Verfahren und Prüfkörper zur Bestimmung der Reinigungswirkung in einem Ultraschallbild
    L. Strobel J. Görlitz, M. Staudacher
    Invention Disclosure
    @Misc{strobel_05_verfahren,
      Title                    = {{Verfahren und Pr\"ufk\"orper zur Bestimmung der Reinigungswirkung in einem Ultraschallbild}},
    
      Author                   = {Strobel, J. G\"orlitz, L. and Staudacher, M.},
      HowPublished
  • On the Application of Multiscale Motion Estimation in Intravascular Elastography
    T. König, F. A. Hamprecht, H. Kücherer
    University of Heidelberg
    @TechReport{koenig_05_application,
      Title                    = {On the Application of Multiscale Motion Estimation in Intravascular Elastography},
      Author                   = {K\"onig, T. and Hamprecht, F. A. and K\"ucherer, H.},
      Institution
  • Report about VOCs Dataset's Analysis based on Random Forests
    H. Zhang, F. A. Hamprecht, A. Amann
    in: Proceedings of the HPC-Asia05, IEEE Computer Society Press(2005), 603-607
    @InProceedings{zhang_05_voc,
      Title                    = {Report about {VOCs }Dataset's Analysis based on Random Forests},
      Author                   = {Zhang, H. and Hamprecht, F. A. and Amann, A.},
      Booktitle                = {Proceedings of the HP
  • Partikel-Verfolgung beim Laserschweißen mit dem Kalman-Filter
    S. Humbert , University of Heidelberg
    Master Thesis
    @MastersThesis{humbert_05_partikel,
      Title                    = {{Partikel-Verfolgung beim Laserschwei{\ss}en mit dem Kalman-Filter}},
      Author                   = {Humbert, S.},
      School                   = {University of Heidelberg},
      Year
  • Detektion von Partikeln in Intensitätsbildern mit Hilfe eines morphologischen Skalenraumes
    L. Görlitz, F. A. Hamprecht, M. Staudacher
    Invention Disclosure
    @Misc{goerlitz_05_detektion,
      Title                    = {{Detektion von Partikeln in Intensit\"atsbildern mit Hilfe eines morphologischen Skalenraumes}},
    
      Author                   = {G\"orlitz, L. and Hamprecht, F. A. and Staudacher, M.},
      HowPub
  • Bayesian Estimation for White Light Interferometry
    M. Hissmann , University of Heidelberg
    PhD Thesis
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL]
    @PhdThesis{hissmann_05_bayesian2,
      Title                    = {{Bayesian Estimation for White Light Interferometry}},
      Author                   = {Hissmann, M.},
      School                   = {University of Heidelberg},
      Year                     = {
  • Bayesian surface estimation for white light interferometry
    M. Hissmann, F. A. Hamprecht
    Optical Engineering, (2005) 44, 1-9
    [10.1117/1.829651 | Technical Report]
    @Article{hissmann_05_bayesian,
      Title                    = {Bayesian surface estimation for white light interferometry},
      Author                   = {Hissmann, M. and Hamprecht, F. A.},
      Journal                  = {Optical Engineering},
      Year
  • Automatisierte Klassifikation von Laserschweißprozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen
    M. Jäger, C. Knoll, F. A. Hamprecht
    Invention Disclosure
    @Misc{jaeger_05_automatisierte,
      Title                    = {{Automatisierte Klassifikation von Laserschwei{\ss}prozessen durch Nutzung von 3D Signalverarbeitungs-Algorithmen}},
    
      Author                   = {J\"ager, M. and Knoll, C. and Hamprecht, F
  • Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen in vivo Aufnahmen
    B. M. Kelm, B. H. Menze, F. A. Hamprecht
    in: GMA-Kongress 2005, Automation als interdisziplinäre Herausforderung, (2005) 1883, 457-466
    [Technical Report]
    @InProceedings{kelm_05_automatische,
      Title                    = {{Automatische Lokalisation von Tumoren in 1H-NMR-spektroskopischen {in vivo} Aufnahmen}},
      Author                   = {Kelm, B. M. and Menze, B. H. and Hamprecht, F. A.},
      Booktitle
  • Optimal lattices for sampling
    H. R. Künsch, E. Agrell, F. A. Hamprecht
    IEEE Transactions on Information Theory, (2005) 51, 634-647
    [10.1109/TIT.2004.840864]
    @Article{kuensch_05_optimal,
      Title                    = {Optimal lattices for sampling},
      Author                   = {K\"unsch, H. R. and Agrell, E. and Hamprecht, F. A.},
      Journal                  = {IEEE Transactions on Information Theory},
      Ye
  • Tell Spotting - Surveying Near Eastern Settlement Mounds from Space
    B. H. Menze, J. A. Ur, A. G. Sherratt
    in: Proceedings of the XXth CIPA International Symposium 2005, Torino, Italy, (2005), 217-223
    [Technical Report]
    @InProceedings{menze_05_tell,
      Title                    = {Tell Spotting - Surveying {Near Eastern} Settlement Mounds from Space},
      Author                   = {Menze, B. H. and Ur, J. A. and Sherratt, A. G.},
      Booktitle                = {Proceedings
  • 2004

  • Classification of in vivo magnetic resonance spectra
    B. H. Menze, M. Wormit, P. Bachert, M. Lichy, H.-P. Schlemmer, F. A. Hamprecht
    in: Classification in ubiquitous challenge: Proceedings of the GfKl 2004, Springer(2004), 362-369
    @InProceedings{menze_04_classification,
      Title                    = {Classification of in vivo magnetic resonance spectra},
      Author                   = {Menze, B. H. and Wormit, M. and Bachert, P. and Lichy, M. and Schlemmer, H.-P. and Hamprecht, F. A
  • Statistische Karten in der Magnetresonanzspektroskopie
    L. Feistner , University of Heidelberg
    Master Thesis
    @MastersThesis{feistner_04_statistische,
      Title                    = {Statistische Karten in der Magnetresonanzspektroskopie},
      Author                   = {Feistner, L.},
      School                   = {University of Heidelberg},
      Year
  • Proximity Graphs for Nonlinear Dimension Reduction
    D. Heck , University of Heidelberg
    Master Thesis
    @MastersThesis{heck_04_proximity,
      Title                    = {Proximity Graphs for Nonlinear Dimension Reduction},
      Author                   = {Heck, D.},
      School                   = {University of Heidelberg},
      Year                     = {2004},
  • Spatial extensions to self-modeling curve resolution
    M. Kirchner , University of Heidelberg
    Master Thesis
    @MastersThesis{kirchner_04_spatial,
      Title                    = {Spatial extensions to self-modeling curve resolution},
      Author                   = {Kirchner, M.},
      School                   = {University of Heidelberg},
      Year                     =
  • Vom Bild zur Information
    F. A. Hamprecht, B. Jähne
    Ruperto Carola - Forschungsmagazin der Universität Heidelberg, (2004) 03.2004, 9-12
    [http://www.uni-heidelberg.de/presse/ruca/ruca04-03]
    @Article{hamprecht_04_bild,
      Title                    = {{Vom Bild zur Information}},
      Author                   = {Hamprecht, F. A. and J\"ahne, B.},
      Journal                  = {Ruperto Carola -- Forschungsmagazin der Universit\"at Heidelberg},
    
  • Two-Stage Classification with Automatic Feature Selection for an Industrial Application
    S. Hader, F. A. Hamprecht
    in: Classification, the ubiquitous challenge: Proceedings of GfKl 2004, Springer(2004), 137-144
    @InCollection{hader_04_two-stage,
      Title                    = {Two-Stage Classification with Automatic Feature Selection for an Industrial Application},
      Author                   = {Hader, S. and Hamprecht, F. A.},
      Booktitle                = {Class
  • Classification
    F. A. Hamprecht
    in: Practical Handbook on Image Processing for Scientific and Technical Applications, CRC Press(2004), 509-519
    @InCollection{hamprecht_04_classification,
      Title                    = {Classification},
      Author                   = {Hamprecht, F. A.},
      Booktitle                = {Practical Handbook on Image Processing for Scientific and Technical Applications},
    
  • Klassifikation von Magnetresonanzspektren
    B. H. Menze , University of Heidelberg
    Master Thesis
    @MastersThesis{menze_04_klassifikation,
      Title                    = {Klassifikation von {Magnetresonanzspektren}},
      Author                   = {Menze, B. H.},
      School                   = {University of Heidelberg},
      Year                     = {200
  • Nonparametric Smoothing of Height maps using ``Confidence'' values
    J. Restle, M. Hissmann, F. A. Hamprecht
    Optical Engineering, (2004) 43, 866-871
    [10.1117/1.1666622]
    @Article{restle_04_nonparametric,
      Title                    = {Nonparametric Smoothing of Height maps using ``Confidence'' values},
      Author                   = {Restle, J. and Hissmann, M. and Hamprecht, F. A.},
      Journal                  = {Optical
  • 2003

  • System Concept for Image Sequence Classification in Laser Welding
    S. Hader
    in: Pattern Recognition, Springer(2003) 2781, 212-219
    [10.1007/b12010]
    @InCollection{hader_03_system,
      Title                    = {System Concept for Image Sequence Classification in Laser Welding},
      Author                   = {Hader, S.},
      Booktitle                = {Pattern Recognition},
      Publisher                =
  • A new approach for defect detection in X-ray CT images
    H. Eisele, F. A. Hamprecht
    in: Pattern Recognition, Springer(2003) 2449, 345-352
    [10.1007/3-540-45783-6]
    @InCollection{eisele_03_approach,
      Title                    = {A new approach for defect detection in {X}-ray {CT} images},
      Author                   = {Eisele, H. and Hamprecht, F. A.},
      Booktitle                = {Pattern Recognition},
      Publishe
  • Efficient Density Clustering
    S. Hader, F. A. Hamprecht
    in: Between Data Science and Applied Data Analysis, Springer(2003), 39-48
    [10.1007/b13634]
    @InCollection{hader_03_efficient,
      Title                    = {Efficient Density Clustering},
      Author                   = {Hader, S. and Hamprecht, F. A.},
      Booktitle                = {Between Data Science and Applied Data Analysis},
      Publisher
  • Exploring a space of materials: spatial sampling design and subset selection
    F. A. Hamprecht, E. Agrell
    in: Experimental Design for Combinatorial and High Throughput Materials Development, Wiley(2003)
    [Technical Report]
    @InCollection{hamprecht_03_exploring,
      Title                    = {Exploring a space of materials: spatial sampling design and subset selection},
      Author                   = {Hamprecht, F. A. and Agrell, E.},
      Booktitle                = {Experimenta
  • Bayessche Schätzung von Höhenkarten aus der Weiß licht-Interferometrie
    M. Hissmann, F. A. Hamprecht
    in: Oberflächenmesstechnik 2003, (2003), 187--196
    @InProceedings{hissmann_03_bayessche,
      Title                    = {{Bayessche Sch\"atzung von H\"ohenkarten aus der Wei{\ss }licht-Interferometrie}},
      Author                   = {Hissmann, M. and Hamprecht, F. A.},
      Booktitle                = {Oberf
  • Optimierung der Weißlichtinterferometrie für Applikationen der industriellen Qualitätskontrolle
    J. Restle , University of Heidelberg
    PhD Thesis
    @PhdThesis{restle_03_optimierung,
      Title                    = {Optimierung der Wei{\ss}lichtinterferometrie f\"ur Applikationen der industriellen Qualit\"atskontrolle},
      Author                   = {Restle, J.},
      School                   = {Universit
  • 2002

  • Für Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion
    B. Jähne, M. Brocke, H. Eisele, S. Hader, F. A. Hamprecht, W. Happold, F. Raisch, J. Restle
    Qualität und Zuverlässigkeit, (2002) 47, 1154-1159
    @Article{jaehne_02_anspruchsvolle,
      Title                    = {{F\"ur Anspruchsvolle - Multidimensionale Bildverarbeitung in der Produktion}},
      Author                   = {J\"ahne, B. and Brocke, M. and Eisele, H. and Hader, S. and Hamprecht, F. A. a
  • Automated defect detection and evaluation in X-ray CT images
    H. Eisele , University of Heidelberg
    PhD Thesis
    [ Notice: Use of undefined constant URL - assumed 'URL' in /wwwbackup/WWW/public/hci.iwr.uni-heidelberg.de/MIP/Publications/tmp.php on line 163 URL]
    @PhdThesis{eisele_02_automated,
      Title                    = {Automated defect detection and evaluation in {X-ray CT} images},
      Author                   = {Eisele, H.},
      School                   = {University of Heidelberg},
      Year
  • A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution
    P. J. Gee, F. A. Hamprecht, L. D. Schuler, W. F. van Gunsteren, E. Duchardt, H. Schwalbe, M. Albert, D. Seebach
    Helv. Chim. Acta, (2002) 85, 618-632
    @Article{gee_02_molecular,
      Title                    = {A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution},
      Author                   = {Gee, P. J. and Hamprecht, F. A. a
  • Chemical library subset selection algorithms: a unified derivation using spatial statistics
    F. A. Hamprecht, W. Thiel, W. F. van Gunsteren
    Journal of Chemical Information and Computer Sciences, (2002) 42, 414-428
    @Article{hamprecht_02_chemical,
      Title                    = {Chemical library subset selection algorithms: a unified derivation using spatial statistics},
      Author                   = {Hamprecht, F. A. and Thiel, W. and van Gunsteren, W. F.},
      Journa
  • 2001

  • Horizontal scannendes Weißlicht-Interferometer
    J. Restle
    Invention Disclosure
    @Misc{restle_01_horizontal,
      Title                    = {{Horizontal scannendes Wei{\ss}licht-Interferometer}},
    
      Author                   = {Restle, J.},
      HowPublished             = {Invention Disclosure},
      Year                     = {2001},
    
    
  • Fibrillation power: An alternative method of ECG spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation
    F. A. Hamprecht, U. Achleitner, A. C. Krismer, K. H. Lindner, V. Wenzel, H.-U. Strohmenger, W. Thiel, W. F. van Gunsteren
    Resuscitation, (2001) 50, 287-296
    @Article{hamprecht_01_fibrillation,
      Title                    = {Fibrillation power: An alternative method of {ECG} spectral analysis for prediction of countershock success in a porcine model of ventricular fibrillation},
      Author                   = {
  • Preliminary results on the prediction of countershock success with fibrillation power
    F. A. Hamprecht, D. Jost, M. Rüttimann, F. Calamai, J. J. Kowalski
    Resuscitation, (2001) 50, 297-299
    @Article{hamprecht_01_preliminary,
      Title                    = {Preliminary results on the prediction of countershock success with fibrillation power},
      Author                   = {Hamprecht, F. A. and Jost, D. and R\"uttimann, M. and Calamai, F. and
  • A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization
    F. A. Hamprecht, C. Peter, X. Daura, W. Thiel, W. F. van Gunsteren
    Journal of Chemical Physics, (2001) 114, 2079-2089
    @Article{hamprecht_01_strategy,
      Title                    = {A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization},
      Author                   = {Hamprecht, F. A. and Peter
  • 1998

  • Theoretical Investigation of NMR Chemical Shifts and Reactivities of Oxovanadium (V) Compounds
    M. Bühl, F. A. Hamprecht
    Journal of Computational Chemistry, (1998) 19, 113-122
    @Article{buehl_98_theoretical,
      Title                    = {Theoretical Investigation of {NMR} Chemical Shifts and Reactivities of Oxovanadium {(V)} Compounds},
      Author                   = {B\"uhl, M. and Hamprecht, F. A.},
      Journal
  • Development and assessment of new exchange-correlation functionals
    F. A. Hamprecht, A. J. Cohen, D. J. Tozer, N. C. Handy
    Journal of Chemical Physics, (1998) 109, 6264-6271
    [10.1063/1.477267]
    @Article{hamprecht_98_development,
      Title                    = {Development and assessment of new exchange-correlation functionals},
      Author                   = {Hamprecht, F. A. and Cohen, A. J. and Tozer, D. J. and Handy, N. C.},
      Journal
  • Threedimensional Quantitative Similarity-Activity Relationships (3DQSiAR) from SEAL Similarity Matrices
    H. Kubinyi, F. A. Hamprecht, T. Mietzner
    Journal of Medicinal Chemistry, (1998) 41, 2553-2564
    @Article{kubinyi_98_threedimensional,
      Title                    = {Threedimensional Quantitative Similarity-Activity Relationships {(3DQSiAR)} from {SEAL} Similarity Matrices},
      Author                   = {Kubinyi, H. and Hamprecht, F. A. and Mietzner
  • 1997

  • Generation of pseudo-native protein structures for threading
    F. A. Hamprecht, W. R. P. Scott, W. F. van Gunsteren
    Proteins, (1997) 28, 522-529
    @Article{hamprecht_97_generation,
      Title                    = {Generation of pseudo-native protein structures for threading},
      Author                   = {Hamprecht, F. A. and Scott, W. R. P. and van Gunsteren, W. F.},
      Journal                  = {P

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